Jatropha Genome Database
- JcCA0291961.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0291961.20 + phase: 0 /partial
(469 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr1g087320.1 Tetratricopeptide-like helical chr01_pseudo... 265 3e-71
IMGA|Medtr7g116900.1 RNA-processing protein, HAT helix chr07_pse... 147 1e-35
IMGA|Medtr7g117700.1 Tetratricopeptide-like helical chr07_pseudo... 145 3e-35
IMGA|Medtr8g120620.1 Tetratricopeptide-like helical chr08_pseudo... 103 2e-22
IMGA|Medtr4g005510.1 Tetratricopeptide-like helical chr04_pseudo... 101 6e-22
IMGA|Medtr5g029790.1 Tetratricopeptide-like helical chr05_pseudo... 101 7e-22
IMGA|Medtr2g126460.1 Tetratricopeptide-like helical chr02_pseudo... 95 6e-20
IMGA|Medtr5g089500.1 Tetratricopeptide-like helical chr05_pseudo... 75 7e-14
>IMGA|Medtr1g087320.1 Tetratricopeptide-like helical
chr01_pseudomolecule_IMGAG_V3 17571774-17568474 E
EGN_Mt090430 20090702
Length = 376
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 162/398 (40%), Positives = 222/398 (55%), Gaps = 34/398 (8%)
Query: 70 LEELHFSNKPKKFPKRNQ-KTMLSSVPSFSIFNVNDELEDAENNGGEREGLMRTVTIGES 128
+ ELH P K P ++ + L S PSF I+N ND + L RTV S
Sbjct: 1 MAELH---SPNKTPTEDEFQYPLRSSPSFEIYNNNDP----------EQVLKRTVM---S 44
Query: 129 IEAKGDEEFTFGKKSMGLIXXXXXXXXXXDLNGIENINLDEVKEPVSPPMYLASXXXXXX 188
+E+ G +FTF + M LI I+N+ + + +P +PPM+LA+
Sbjct: 45 LESIGTSDFTFERSKMDLIQEEEDNENDWSTE-IQNLGVVDDVQPSTPPMFLATGLGVDG 103
Query: 189 XXXXXXXX-XXXXXMALPNFDESGDLEEYYKRMIDEYPCHPLFLANYAQLLQSKGDLHGA 247
M +PN ES +L+EYYK M+ +YP HPL L YA LQ KG+L A
Sbjct: 104 GDVVSDNNFIISDDMFVPNLQESENLQEYYKIMVHDYPSHPLILKKYAHFLQGKGELQDA 163
Query: 248 EEYYHRASLADPGDSEILLKYAKLEWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFL 307
EEY+HRA+LADP D EIL+ YAKL W+ HH++D A F+ A + +PQDS VLAAYASFL
Sbjct: 164 EEYFHRATLADPNDGEILMHYAKLVWENHHDRDRASVYFERAAKASPQDSDVLAAYASFL 223
Query: 308 WXXXXXXXXXXQQLQHIKVEEEEHLTRLVNSAANQDFELLQLPPSMLAIDVADHATSDID 367
W +E++E T+ +N+ AN++ +L AT++
Sbjct: 224 WETEDDENESENHTTQNDMEKQE--TKPINT-ANEENGAEKL------------ATANYS 268
Query: 368 KGIDVDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSR 427
+ + +Y K+M+ ENP + L L YAQFL+QS DL AE+YYSRA+ +P DGE +S
Sbjct: 269 EDSNDADYLKKMINENPNNPLFLKKYAQFLFQSNRDLEAAEDYYSRAISADPSDGETISE 328
Query: 428 YAKLVWELHRDHDKASSYFERAVQAKPEDSHVLAAYAS 465
YAKL W+LH D +KA S FE+AV+A P DS+VLAAY
Sbjct: 329 YAKLQWQLHHDQEKALSLFEQAVKATPGDSNVLAAYTC 366
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 202 MALPNFDESGDLEEYYKRMIDEYPCHPLFLANYAQLL-QSKGDLHGAEEYYHRASLADPG 260
+A N+ E + +Y K+MI+E P +PLFL YAQ L QS DL AE+YY RA ADP
Sbjct: 262 LATANYSEDSNDADYLKKMINENPNNPLFLKKYAQFLFQSNRDLEAAEDYYSRAISADPS 321
Query: 261 DSEILLKYAKLEWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
D E + +YAKL+WQLHH+Q+ ALS F+ AV+ P DS VLAAY FLW
Sbjct: 322 DGETISEYAKLQWQLHHDQEKALSLFEQAVKATPGDSNVLAAYTCFLW 369
>IMGA|Medtr7g116900.1 RNA-processing protein, HAT helix
chr07_pseudomolecule_IMGAG_V3 27168061-27166019 E
EGN_Mt090430 20090702
Length = 353
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 83/102 (81%)
Query: 364 SDIDKGIDVDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGE 423
+D D V+EYYK+M+++NP + L L NYAQFLYQ K D GAEEYYSRA+L +P DGE
Sbjct: 218 NDGDSNHGVEEYYKKMVQQNPGNPLFLRNYAQFLYQCKQDREGAEEYYSRAILADPNDGE 277
Query: 424 IMSRYAKLVWELHRDHDKASSYFERAVQAKPEDSHVLAAYAS 465
++S+Y KLVWELHRD ++ASSYFERAVQA P+DSHV AAYAS
Sbjct: 278 VLSQYGKLVWELHRDEERASSYFERAVQASPDDSHVQAAYAS 319
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 132/270 (48%), Gaps = 33/270 (12%)
Query: 48 RHKGF-RRAFSDSNLEKLVYPDKLEELHFSNKPKKFPKRNQKTMLSSVPSFSIFNVNDEL 106
++KG RR S+ NLE L Y + + K++ R + L ++PSFS+
Sbjct: 77 QNKGLIRRVQSEGNLEDLAYATNCNN-NMDSSSKRYSVRQRGFALETIPSFSL------- 128
Query: 107 EDAENNGGEREGLMRTVTIGESIEAKG-DEEFT--FGKKSMGLIXXXXXXXXXXDLNGIE 163
++ GL T E +G D++F+ + G++ + +
Sbjct: 129 -------SKQTGLREEET---DFEDEGYDDDFSSVLNSTASGVVVNDEVK------DRVF 172
Query: 164 NINLDEVKEPVSPPMYLASXXXXXXXXXXXXXXXXXXXMALPNFDESGD----LEEYYKR 219
++ E + + MYLA ++ + GD +EEYYK+
Sbjct: 173 RVSFGEEGKVGNKEMYLAKGLGVDGIGGCSGGNGGGDYNSMGSGGNDGDSNHGVEEYYKK 232
Query: 220 MIDEYPCHPLFLANYAQLL-QSKGDLHGAEEYYHRASLADPGDSEILLKYAKLEWQLHHN 278
M+ + P +PLFL NYAQ L Q K D GAEEYY RA LADP D E+L +Y KL W+LH +
Sbjct: 233 MVQQNPGNPLFLRNYAQFLYQCKQDREGAEEYYSRAILADPNDGEVLSQYGKLVWELHRD 292
Query: 279 QDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
++ A S F+ AV+ +P DS V AAYASFLW
Sbjct: 293 EERASSYFERAVQASPDDSHVQAAYASFLW 322
>IMGA|Medtr7g117700.1 Tetratricopeptide-like helical
chr07_pseudomolecule_IMGAG_V3 27544885-27546819 F
EGN_Mt090430 20090702
Length = 363
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/94 (70%), Positives = 80/94 (85%)
Query: 372 VDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKL 431
V++YYK+M+++NP + L L NYAQFLYQ K DL GAEEYYSRA+L +P DGE++S+Y KL
Sbjct: 237 VEQYYKKMVQQNPGNPLFLRNYAQFLYQCKQDLEGAEEYYSRAILADPNDGEVLSQYGKL 296
Query: 432 VWELHRDHDKASSYFERAVQAKPEDSHVLAAYAS 465
VWELH D ++ASSYFERAVQA PEDSHV AAYAS
Sbjct: 297 VWELHHDEERASSYFERAVQASPEDSHVQAAYAS 330
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 165/357 (46%), Gaps = 73/357 (20%)
Query: 1 MLLRSASNPLIKSLLSPFSGSLNPDIDAKHHLSSNILPHTDKETISLR------------ 48
MLLRS+S P++ +L+S F+ + I + H + + L T S++
Sbjct: 1 MLLRSSSTPVLGNLISSFTDNTPTHIQSLHLETCHALKPLPPPTTSIQHHHHHNNHRLSC 60
Query: 49 ---------------HKGFRRAFSDSNLEKLVYPDKL----EELHF-SNKPKKFPKRNQK 88
+KGFRR S+ NLE L Y E L + + K++ R Q+
Sbjct: 61 SSSPISPSISDLERQNKGFRRVQSEGNLEDLAYATTFNNNEERLSYMDSSSKRYSARQQR 120
Query: 89 TM-LSSVPSFSIFNVNDELEDAENNGGEREGL---MRTVTIGESIEAKGDEEFTFGKKSM 144
L ++PSFS+ +R GL V + + +G +EF+ + M
Sbjct: 121 GFALETIPSFSL--------------SKRTGLREEEEDVEESDIEDEEGYDEFSVMNRMM 166
Query: 145 GLIXXXXXXXXXXDLNGIENINLDEVKEPVSPPMYLA-------SXXXXXXXXXXXXXXX 197
+++ + ++ DE E MYLA
Sbjct: 167 ----------QSEEVDRVCRVSFDEEGEFGDNEMYLAKGLGVDFCGGDGIGGGCRGGGNG 216
Query: 198 XXXXMALPNFDESGD-----LEEYYKRMIDEYPCHPLFLANYAQLL-QSKGDLHGAEEYY 251
++ + GD +E+YYK+M+ + P +PLFL NYAQ L Q K DL GAEEYY
Sbjct: 217 GGDYNSMDSERNDGDNNNHGVEQYYKKMVQQNPGNPLFLRNYAQFLYQCKQDLEGAEEYY 276
Query: 252 HRASLADPGDSEILLKYAKLEWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
RA LADP D E+L +Y KL W+LHH+++ A S F+ AV+ +P+DS V AAYASFLW
Sbjct: 277 SRAILADPNDGEVLSQYGKLVWELHHDEERASSYFERAVQASPEDSHVQAAYASFLW 333
>IMGA|Medtr8g120620.1 Tetratricopeptide-like helical
chr08_pseudomolecule_IMGAG_V3 27614060-27615473 F
EGN_Mt090430 20090702
Length = 292
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 365 DIDKGID-VDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGE 423
D + G D D YY+ M+E NP + L L NYA++L + + D AEEY RA+L P DG
Sbjct: 154 DSNHGNDSTDLYYRTMIEANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGN 213
Query: 424 IMSRYAKLVWELHRDHDKASSYFERAVQAKPEDSHVLAAYA 464
++S YA L+WE H+D +A +YF++AV+A P+D +VLA+YA
Sbjct: 214 VLSLYADLIWECHKDAPRAETYFDQAVKAAPDDCYVLASYA 254
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 208 DESGDLEEYYKRMIDEYPCHPLFLANYAQLLQS-KGDLHGAEEYYHRASLADPGDSEILL 266
++S DL YY+ MI+ P +PLFL NYA+ L+ + D AEEY RA LA+P D +L
Sbjct: 159 NDSTDL--YYRTMIEANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLS 216
Query: 267 KYAKLEWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
YA L W+ H + A + F AV+ AP D VLA+YA FLW
Sbjct: 217 LYADLIWECHKDAPRAETYFDQAVKAAPDDCYVLASYAHFLW 258
>IMGA|Medtr4g005510.1 Tetratricopeptide-like helical
chr04_pseudomolecule_IMGAG_V3 268248-270933 E
EGN_Mt090430 20090702
Length = 253
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 67/99 (67%), Gaps = 1/99 (1%)
Query: 367 DKGID-VDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIM 425
D G D +D YY+ M+E +P +LLL NY +FL + GD + AEE RA+L PGDG +M
Sbjct: 118 DHGRDRLDAYYQNMIEAHPCDALLLGNYGKFLKEVCGDYAKAEECLERAILANPGDGHVM 177
Query: 426 SRYAKLVWELHRDHDKASSYFERAVQAKPEDSHVLAAYA 464
S YA L+WE ++ +A YF++A+Q+ P D +VLA+YA
Sbjct: 178 SIYADLIWETKKNAARAQQYFDQAIQSDPNDCYVLASYA 216
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 206 NFDESGD--LEEYYKRMIDEYPCHPLFLANYAQLLQS-KGDLHGAEEYYHRASLADPGDS 262
NF++ G L+ YY+ MI+ +PC L L NY + L+ GD AEE RA LA+PGD
Sbjct: 115 NFNDHGRDRLDAYYQNMIEAHPCDALLLGNYGKFLKEVCGDYAKAEECLERAILANPGDG 174
Query: 263 EILLKYAKLEWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
++ YA L W+ N A F A++ P D VLA+YA FLW
Sbjct: 175 HVMSIYADLIWETKKNAARAQQYFDQAIQSDPNDCYVLASYAKFLW 220
>IMGA|Medtr5g029790.1 Tetratricopeptide-like helical
chr05_pseudomolecule_IMGAG_V3 12452991-12450968 E
EGN_Mt090430 20090702
Length = 253
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 68/95 (71%)
Query: 370 IDVDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYA 429
+++ YY+ ML+ NP +LLL NY ++L++ + ++ AEEYY RA+L P D E++S Y
Sbjct: 120 MEIGAYYEEMLKSNPADALLLRNYGKYLHEVEKNMVRAEEYYGRAILANPEDAELLSLYG 179
Query: 430 KLVWELHRDHDKASSYFERAVQAKPEDSHVLAAYA 464
KL+WE+ RD ++A SYF++A+ P+DS VL +YA
Sbjct: 180 KLIWEMSRDEERAKSYFDQAIHVDPDDSTVLGSYA 214
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 212 DLEEYYKRMIDEYPCHPLFLANYAQLL-QSKGDLHGAEEYYHRASLADPGDSEILLKYAK 270
++ YY+ M+ P L L NY + L + + ++ AEEYY RA LA+P D+E+L Y K
Sbjct: 121 EIGAYYEEMLKSNPADALLLRNYGKYLHEVEKNMVRAEEYYGRAILANPEDAELLSLYGK 180
Query: 271 LEWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
L W++ +++ A S F A+ V P DS VL +YA F+W
Sbjct: 181 LIWEMSRDEERAKSYFDQAIHVDPDDSTVLGSYAHFMW 218
>IMGA|Medtr2g126460.1 Tetratricopeptide-like helical
chr02_pseudomolecule_IMGAG_V3 30628671-30630187 E
EGN_Mt090430 20090702
Length = 225
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 60/86 (69%)
Query: 371 DVDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAK 430
+ D YY+ M+E NP +SLLL NYA+FL + +GD AEEY RA+L P D + +S YA
Sbjct: 138 ETDAYYQNMIEANPNNSLLLGNYAKFLKEVRGDYGKAEEYVERAILASPSDADALSLYAD 197
Query: 431 LVWELHRDHDKASSYFERAVQAKPED 456
L+W+ ++ D+A +YF+RA+Q+ P D
Sbjct: 198 LIWQTEKNADRAEAYFDRAIQSDPND 223
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 212 DLEEYYKRMIDEYPCHPLFLANYAQLLQS-KGDLHGAEEYYHRASLADPGDSEILLKYAK 270
+ + YY+ MI+ P + L L NYA+ L+ +GD AEEY RA LA P D++ L YA
Sbjct: 138 ETDAYYQNMIEANPNNSLLLGNYAKFLKEVRGDYGKAEEYVERAILASPSDADALSLYAD 197
Query: 271 LEWQLHHNQDTALSNFKHAVRVAPQD 296
L WQ N D A + F A++ P D
Sbjct: 198 LIWQTEKNADRAEAYFDRAIQSDPND 223
>IMGA|Medtr5g089500.1 Tetratricopeptide-like helical
chr05_pseudomolecule_IMGAG_V3 34783531-34780621 E
EGN_Mt090430 20090702
Length = 416
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 59/94 (62%)
Query: 372 VDEYYKRMLEENPYSSLLLSNYAQFLYQSKGDLSGAEEYYSRALLIEPGDGEIMSRYAKL 431
D YYK+ + PY+SLLLSNYAQFL+ D GAEEYY +++++E + E RY
Sbjct: 298 TDAYYKKHINLAPYNSLLLSNYAQFLFLVMKDNDGAEEYYKQSVVVESPEAEAYCRYGDF 357
Query: 432 VWELHRDHDKASSYFERAVQAKPEDSHVLAAYAS 465
+ + +D+ A + +A++A P +++ L+ YAS
Sbjct: 358 LLWIRKDNWAAELRYLQALEADPGNTYYLSKYAS 391
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 207 FDESGDLEEYYKRMIDEYPCHPLFLANYAQLL-QSKGDLHGAEEYYHRASLADPGDSEIL 265
++E + YYK+ I+ P + L L+NYAQ L D GAEEYY ++ + + ++E
Sbjct: 292 YEEYEKTDAYYKKHINLAPYNSLLLSNYAQFLFLVMKDNDGAEEYYKQSVVVESPEAEAY 351
Query: 266 LKYAKLEWQLHHNQDTALSNFKHAVRVAPQDSQVLAAYASFLW 308
+Y + + A + A+ P ++ L+ YASFLW
Sbjct: 352 CRYGDFLLWIRKDNWAAELRYLQALEADPGNTYYLSKYASFLW 394