Jatropha Genome Database

JcCA0291961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0291961.10 - phase: 0 /partial
         (158 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g087340.1 C2 chr01_pseudomolecule_IMGAG_V3 17576911-1...   239   3e-64
IMGA|Medtr1g065790.1 C2 chr01_pseudomolecule_IMGAG_V3 13214233-1...   204   2e-53
IMGA|Medtr1g093800.1 C2 chr01_pseudomolecule_IMGAG_V3 19204628-1...   195   8e-51
IMGA|Medtr7g143470.1 C2 chr07_pseudomolecule_IMGAG_V3 34435900-3...   108   1e-24
IMGA|Medtr8g138850.1 C2 chr08_pseudomolecule_IMGAG_V3 33693772-3...    56   8e-09
IMGA|Medtr3g093200.1 C2 chr03_pseudomolecule_IMGAG_V3 22092932-2...    54   3e-08
IMGA|Medtr5g077230.1 C2 chr05_pseudomolecule_IMGAG_V3 28435172-2...    49   9e-07
IMGA|Medtr5g077910.1 C2 chr05_pseudomolecule_IMGAG_V3 28787771-2...    49   2e-06

>IMGA|Medtr1g087340.1 C2 chr01_pseudomolecule_IMGAG_V3
           17576911-17578959 E EGN_Mt090430 20090702
          Length = 682

 Score =  239 bits (611), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 129/156 (82%), Gaps = 2/156 (1%)

Query: 1   MSRVIPQPFQLLELNVISGQDLAQVSRKMRTYAVAWVHPERKLSTRLDIYSHNNPTWNDK 60
           MS+++  PFQLLELNVIS QDLA + R MRTYAVAWVHP+RKLSTR+D   H NPTWNDK
Sbjct: 1   MSQIL-APFQLLELNVISAQDLASLGRNMRTYAVAWVHPDRKLSTRVDTQGHTNPTWNDK 59

Query: 61  FVFRVDDEFLYRETSAIMVEIYAVSWFRDIHVGTVRVIVGNLIPPAEHKKHQKHGVQLGM 120
           FVFRVD+EFLY +TSAIMVE+YA+ WF+DIHVGTVRV+VGNLIPP     H      +GM
Sbjct: 60  FVFRVDEEFLYSDTSAIMVEVYALHWFKDIHVGTVRVLVGNLIPPPTRPFHNDR-APMGM 118

Query: 121 RFVALQVRRRSGRPQGILNIGVAFLDASRKSMPLYT 156
           RFVALQVRR SGRPQGILNIGV  LD+S +SMPLYT
Sbjct: 119 RFVALQVRRPSGRPQGILNIGVTVLDSSMRSMPLYT 154


>IMGA|Medtr1g065790.1 C2 chr01_pseudomolecule_IMGAG_V3
           13214233-13212481 E EGN_Mt090430 20090702
          Length = 459

 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 115/150 (76%), Gaps = 1/150 (0%)

Query: 9   FQLLELNVISGQDLAQVSRKMRTYAVAWVHPERKLSTRLDIYSHNNPTWNDKFVFRVDDE 68
           +QLLELNVIS QDLA+V R MRTYAVAWV P+RKLSTR+D  S  NP WNDKFVFRVD++
Sbjct: 8   YQLLELNVISAQDLAEVGRSMRTYAVAWVDPDRKLSTRVDSQSGTNPAWNDKFVFRVDED 67

Query: 69  FLYRETSAIMVEIYAVSWFRDIHVGTVRVIVGNLIPPAEHKKHQKHGVQLGMRFVALQVR 128
           FLY E S I ++IYA+ WF+DIHVGT  V+  ++IPP+    H  +    GM+FV LQV 
Sbjct: 68  FLYDENSTITIDIYAIHWFKDIHVGTAHVLADDIIPPSR-PSHSNNYKPQGMQFVGLQVH 126

Query: 129 RRSGRPQGILNIGVAFLDASRKSMPLYTQT 158
           R SGRP+GILN+GVA +D+S +SMPLYT  
Sbjct: 127 RPSGRPKGILNVGVAVIDSSMRSMPLYTHN 156


>IMGA|Medtr1g093800.1 C2 chr01_pseudomolecule_IMGAG_V3
           19204628-19205778 E EGN_Mt090430 20090702
          Length = 375

 Score =  195 bits (496), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 94/157 (59%), Positives = 119/157 (75%), Gaps = 10/157 (6%)

Query: 1   MSRVIPQPFQLLELNVISGQDLAQVSRKMRTYAVAWVHPERKLSTRLDIYSHNNPTWNDK 60
           MS + P PFQLLE+NVIS QDLA VS+ ++ YAVAW++PERKL+T+ D + HNNPTWN+K
Sbjct: 1   MSMLAP-PFQLLEINVISAQDLAPVSKSIKAYAVAWLNPERKLTTQADPHGHNNPTWNEK 59

Query: 61  FVFRVDDEFLYRETSAIMVEIYAVSWFRDIHVGTVRVIVGNLIPPAEHKKHQKHGVQLGM 120
           FVFRVDD+FL  E S IM+EIYA +W RD+ +GTV V + NL+P     K         +
Sbjct: 60  FVFRVDDDFLLSEESVIMIEIYASAWLRDVLIGTVAVHLNNLLPRNRKSK---------I 110

Query: 121 RFVALQVRRRSGRPQGILNIGVAFLDASRKSMPLYTQ 157
           RFVALQVRR SGRPQGILNIGV  +DA+ +SMP+Y++
Sbjct: 111 RFVALQVRRPSGRPQGILNIGVNVVDATMRSMPMYSE 147


>IMGA|Medtr7g143470.1 C2 chr07_pseudomolecule_IMGAG_V3
           34435900-34437258 E EGN_Mt090430 20090702
          Length = 274

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 88/154 (57%), Gaps = 11/154 (7%)

Query: 1   MSRVIPQPFQ---LLELNVISGQDLAQVS---RKMRTYAVAWVHPERKLSTRLDIYSHNN 54
           M+ ++  P +   +LE+N+IS Q L   S   R  +TYA+ W+    KL TR+D     N
Sbjct: 1   MASLVKSPAKTQLVLEINLISAQGLKPPSSPRRNFQTYALTWIDSSTKLRTRVDKIGGQN 60

Query: 55  PTWNDKFVFRVDDEFLYRETSAIMVEIYAVSWFRDIHVGTVRVIVGNLIPPAEHKKHQKH 114
           PTWNDKF+FR+  EFL  ETS + V IYAV  FRD  VGTVR ++ N++  +      + 
Sbjct: 61  PTWNDKFLFRITPEFLASETSGVSVAIYAVGTFRDHLVGTVRFLISNILSSSSADSGNRT 120

Query: 115 GVQLGMRFVALQVRRRSGRPQGILNIGVAFLDAS 148
                  F A+Q+RR SG   GILNIG   +D S
Sbjct: 121 PC-----FSAVQIRRPSGSFCGILNIGAMVVDGS 149


>IMGA|Medtr8g138850.1 C2 chr08_pseudomolecule_IMGAG_V3
           33693772-33692728 E EGN_Mt090430 20090702
          Length = 233

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 19/145 (13%)

Query: 9   FQLLELNVISGQDLAQVS--RKMRTYAVAWVHPE----RKLSTRLDIYSHNNPTWND--K 60
           ++ LELN+ S +DL  V+   KM  YAV  +  +    +K  T LD  +  NPTWN   K
Sbjct: 3   YKTLELNLSSAKDLNNVNLFYKMDVYAVVSIFGDPLHKQKTKTPLDREAGTNPTWNFSVK 62

Query: 61  FVFRVDDEFLYRETS-AIMVEIYAVSWFRDIHVGTVRVIVGNLIPPAEHKKHQKHGVQLG 119
           F F   +E L R+    + + +  +    D ++G+V++ +  L+       H   G    
Sbjct: 63  FTF---NELLARQNRLTLKITLRCLRNLVDKNIGSVKIPLRELV-------HDHTGDGEL 112

Query: 120 MRFVALQVRRRSGRPQGILNIGVAF 144
            + V+ QVR+ SG+P+G  N    F
Sbjct: 113 FQHVSYQVRKPSGKPKGSFNFSYKF 137


>IMGA|Medtr3g093200.1 C2 chr03_pseudomolecule_IMGAG_V3
           22092932-22094212 E EGN_Mt090430 20090702
          Length = 317

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 15/147 (10%)

Query: 2   SRVIPQPFQLLELNVISGQDLAQVSRK---MRTYAVAWVHPERKLSTRLDIYSHNNPTWN 58
           SR  P     L+L +IS + L  V+ K   ++ Y V W+ P+R+L+T+ D   + +P WN
Sbjct: 4   SRPPPSKSIDLDLTIISAKHLKNVNWKTGDLKPYVVFWLDPDRRLATKSDDSGNTSPVWN 63

Query: 59  DKFVFRVDDEFLYRETSAIMVEIYAVSWFRDIHVGTVRVIVGNLIPPAEHKKHQKHGVQL 118
           ++F   +    L  + S + +EI     F      T + +V  L  P +      H   +
Sbjct: 64  ERFTLPLS---LPLQDSTLTLEI-----FHSKPSDTPKPLVATLRLPLKDLPDLHHSTIV 115

Query: 119 GMRFVALQVRRRSGRPQGILNIGVAFL 145
                   V R SGRPQG +++ ++ L
Sbjct: 116 ----KKFSVVRPSGRPQGKIHLKISLL 138


>IMGA|Medtr5g077230.1 C2 chr05_pseudomolecule_IMGAG_V3
           28435172-28434510 E EGN_Mt090430 20090702
          Length = 199

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 28  KMRTYAVAWVHPERKLSTRLDIYSHNNPTWNDKFVFRVDDEFLYRETSAIMVEIYAVS-- 85
           K + YA+ WV P  K  T++D  ++ NP W  KF  +VD+        A+ VE+Y+    
Sbjct: 63  KRQWYAIGWVDPTNKYITKVDASTNTNPLWRTKFSIQVDNSDPNFHDLALNVEVYSRDPF 122

Query: 86  WFRDIHVGTVRVIVGNLIPPAEHKKHQKHGVQLGMRFV-ALQVR-RRSGRPQGILNIGV 142
           +F +   G+  V++   +           G++ G   V + Q+R ++SG+P G +++ V
Sbjct: 123 FFTEKLHGSATVLLKEFLAKG---LLNDEGLRQGSEEVGSYQLRKKKSGKPSGFVDVSV 178


>IMGA|Medtr5g077910.1 C2 chr05_pseudomolecule_IMGAG_V3
           28787771-28783903 E EGN_Mt090430 20090702
          Length = 298

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 28  KMRTYAVAWVHPERKLSTRLDIYSHNNPTWNDKFVFRVDDEFLYRETSAIMVEIYAVS-- 85
           K + YA+ WV P  K  T++D  ++ NP W  KF  +VD+        A+ VE+Y+    
Sbjct: 24  KRQWYAIGWVDPTNKYITKVDASTNTNPLWRTKFSIQVDNSDPNFHDLALNVEVYSRDPF 83

Query: 86  WFRDIHVGTVRVIVGNLIPPAEHKKHQKHGVQLGMRFV-ALQVR-RRSGRPQGILNIGV 142
           +F +   G+  V++   +           G++ G   V + Q+R ++SG+P G +++ V
Sbjct: 84  FFTEKLHGSATVLLKEFLAKG---LLNDEGLRQGSEEVGSYQLRKKKSGKPSGFVDVSV 139