Jatropha Genome Database

JcCA0289691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0289691.10 - phase: 0 /pseudo/partial
         (463 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233659_24.1 MutS 2 protein AC233659.1 104034-100163 E EGN...   256   1e-68

>IMGA|AC233659_24.1 MutS 2 protein AC233659.1 104034-100163 E
           EGN_Mt090430 20090702
          Length = 775

 Score =  256 bits (655), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 137/262 (52%), Positives = 177/262 (67%), Gaps = 13/262 (4%)

Query: 212 MQKLCKSTTRRVPALMAXXXXXXXXXXXXXXSQIEIVVHNFENQLRKASPDQFNSLIRKS 271
           +Q   +   RR   LMA              SQ+EIV+  FE QL+    +Q NS+I++S
Sbjct: 517 IQGEAEDLDRRETMLMAKEAQQVQQELEDAKSQMEIVIQKFEKQLKDLGRNQLNSIIKES 576

Query: 272 ESAIASIVEAHCPAESLPANEAD-SSSYTPQLGEEVHVKGLGDKVVTVVEALGNDETILV 330
           E+AIASIV+AH PA   P N+AD ++SYTPQ GE+V VKGLG K+ TVVE LG+DETILV
Sbjct: 577 ETAIASIVKAHTPAVGFPINDADRTTSYTPQFGEQVRVKGLGGKLATVVELLGDDETILV 636

Query: 331 QYGKIRVCVKKSDIRSIQANKRRDSTHLVPRLRKQGQQ--------SHSEVNK-NEEVSY 381
           QYGK++V VKK+ IR+I  + +   T        QG+Q         + E+N  N++  Y
Sbjct: 637 QYGKVKVRVKKNRIRAIPPSAKNPVTSSATH---QGRQKPLNGKSRGNLEMNGGNDDSYY 693

Query: 382 GPRVQTSKNTVDLRGMRVEEAAIYLDMALSESKPKSVIFVVHGMGTGAVKQRALEILGKH 441
           GP VQTSKNTVDLRGMR+EEAAI+L+MA++ S+P SV+FV+HGMGTGAVK RAL IL KH
Sbjct: 694 GPVVQTSKNTVDLRGMRLEEAAIHLEMAINASQPYSVLFVIHGMGTGAVKDRALAILQKH 753

Query: 442 PCVAKYEAEGPTNFGCTVAYIK 463
           P V  +E E P N+GCT+A +K
Sbjct: 754 PRVTHFEPESPMNYGCTIARVK 775