Jatropha Genome Database

JcCA0289001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0289001.10 + phase: 0 /partial
         (190 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g115280.1 Asparagine synthase chr04_pseudomolecule_IM...   318   1e-87

>IMGA|Medtr4g115280.1 Asparagine synthase
           chr04_pseudomolecule_IMGAG_V3 26646112-26637256 E
           EGN_Mt090430 20090702
          Length = 646

 Score =  318 bits (815), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/187 (82%), Positives = 168/187 (89%), Gaps = 3/187 (1%)

Query: 1   DLNIGIALWLAASGDGWVYKGMNNNADENQQRLRYKSKARIVLVGSGADEQCAGYGRHRT 60
           DLNIGIALWLA+ GDGWV    N   D+   R++YKS ARI+LVGSGADEQCAGYGRHRT
Sbjct: 456 DLNIGIALWLASCGDGWVSADDN---DDTHARIKYKSNARILLVGSGADEQCAGYGRHRT 512

Query: 61  KYRCGSWLGLHEEMKLDMQRIWKRNMGRDDRCIADNGKEARFPFLDEDVIRTLLDIPLWK 120
            +R GSWLGL EEMKLDMQRIWKRN+GRDDRCIADNGKEARFPFLDEDVIR LL+IPLW+
Sbjct: 513 SFRRGSWLGLDEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRVLLNIPLWE 572

Query: 121 VANLNQPSGTGDKKILREVAWMLGLHEAAILPKRAIQFGSRIARESNRKNFGSNRAANQA 180
           VANL+QPSG GDKKILREVA +LGL+EAA+LPKRAIQFGSRIARESNRKNFGSNRAANQA
Sbjct: 573 VANLDQPSGIGDKKILREVAQLLGLYEAAVLPKRAIQFGSRIARESNRKNFGSNRAANQA 632

Query: 181 SAGSVVI 187
           SAGSV I
Sbjct: 633 SAGSVRI 639