Jatropha Genome Database
- JcCA0287971.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0287971.10 + phase: 0
(218 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g160490.1 Snf7 chr04_pseudomolecule_IMGAG_V3 40687548... 171 3e-43
IMGA|Medtr4g160720.1 Snf7 chr04_pseudomolecule_IMGAG_V3 40779026... 146 7e-36
IMGA|Medtr1g112210.1 Snf7 chr01_pseudomolecule_IMGAG_V3 24084107... 47 5e-06
IMGA|Medtr1g112210.2 Snf7 chr01_pseudomolecule_IMGAG_V3 24084107... 47 5e-06
>IMGA|Medtr4g160490.1 Snf7 chr04_pseudomolecule_IMGAG_V3
40687548-40682851 E EGN_Mt090430 20090702
Length = 216
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 101/148 (68%), Gaps = 5/148 (3%)
Query: 1 MFNRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRARNKRAAI 60
+ RL GKPK + +A T+ FTR++NKRAAI
Sbjct: 5 LLTRLLGKPKPKVSAQETI-----AKLNERKRRQCYLKKAGAEVEKAKEFTRSKNKRAAI 59
Query: 61 QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNID 120
QCLKRKRLY+QQ+EQLGNFQLRIHDQMIMLEGA+ATTETVDALRTGA AMK MQ N+D
Sbjct: 60 QCLKRKRLYDQQVEQLGNFQLRIHDQMIMLEGAQATTETVDALRTGAFAMKRMQTEFNLD 119
Query: 121 DVDKTMDEINEQTENMKQIQEALATPIG 148
DVD MDEI EQTE M+Q+QEAL+ PIG
Sbjct: 120 DVDNIMDEITEQTEKMRQVQEALSAPIG 147
>IMGA|Medtr4g160720.1 Snf7 chr04_pseudomolecule_IMGAG_V3
40779026-40782491 E EGN_Mt090430 20090702
Length = 147
Score = 146 bits (369), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/121 (61%), Positives = 84/121 (69%), Gaps = 2/121 (1%)
Query: 1 MFNRLFGKPKQ--ETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTRARNKRA 58
MF++LFGK KQ + N L+TL+ FTRA+NKRA
Sbjct: 5 MFSKLFGKTKQDQQANTLSTLEKLNETLGMLEKKESVLLKKAAAEVERAKEFTRAKNKRA 64
Query: 59 AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATN 118
AIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETV ALRTGAAAMK MQ+ TN
Sbjct: 65 AIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVAALRTGAAAMKTMQQETN 124
Query: 119 I 119
+
Sbjct: 125 L 125
>IMGA|Medtr1g112210.1 Snf7 chr01_pseudomolecule_IMGAG_V3
24084107-24080106 F EGN_Mt090430 20090702
Length = 235
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 56 KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQK 115
K A++ LK+KR+YE Q + L N + EG K +T+ AL++ +K M K
Sbjct: 62 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVQFAAEGIKDAQQTMSALKSANKDLKGMMK 121
Query: 116 ATNIDDVDKTMDEINEQTENMKQIQEALA 144
I D+D DE+ + + +IQE L
Sbjct: 122 TVKIQDIDNLQDEMMDLMDVSNEIQETLG 150
>IMGA|Medtr1g112210.2 Snf7 chr01_pseudomolecule_IMGAG_V3
24084107-24080106 F EGN_Mt090430 20090702
Length = 219
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 56 KRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQK 115
K A++ LK+KR+YE Q + L N + EG K +T+ AL++ +K M K
Sbjct: 62 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVQFAAEGIKDAQQTMSALKSANKDLKGMMK 121
Query: 116 ATNIDDVDKTMDEINEQTENMKQIQEALA 144
I D+D DE+ + + +IQE L
Sbjct: 122 TVKIQDIDNLQDEMMDLMDVSNEIQETLG 150