Jatropha Genome Database

JcCA0287821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0287821.10 + phase: 2 /TE
         (261 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H...    74   1e-13
IMGA|Medtr5g039890.1 hypothetical protein chr05_pseudomolecule_I...    71   6e-13
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po...    70   1e-12
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H...    62   2e-10
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H...    62   4e-10
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy...    59   3e-09
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H...    50   1e-06
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H...    48   5e-06

>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
            EGN_Mt090430 20090702
          Length = 1275

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 78/143 (54%), Gaps = 2/143 (1%)

Query: 114  DSRKSTFGYLFLLTRGVIS*KSGK*SVIATSTMEAEFVACFEATVHALWLRNFVSGLGIV 173
            D+RKS  G  F L   +IS ++ K + ++ S+ EAE+ A   AT    WL   ++ L I 
Sbjct: 1103 DTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQWLLYLLNDLHI- 1161

Query: 174  DSIARSLIIFCDNSAAVFFSKNNKYSKGAKHMDLKYLSVKEEVHKHKVSIEHIGTDLMIV 233
             + ++  +++CDN +A+  + N  + +  KH+++    V+E++    + +  + +   I 
Sbjct: 1162 -TCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKLLPVSSQDQIA 1220

Query: 234  DPLTKGLPPKIFTGHVDRMGIID 256
            D  TK L PK F+  + ++G+ID
Sbjct: 1221 DFFTKALLPKTFSLLLSKLGLID 1243


>IMGA|Medtr5g039890.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 16975120-16975499 H
           EGN_Mt090430 20090702
          Length = 104

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 5/62 (8%)

Query: 193 SKNNKYSKGAKHMDLKYLSVKEEVHKHKVSIEHIGTDLMIVDPLTKGLPPKIFTGHVDRM 252
           S+NNKYSKGAK+M+LKY        +H+V IEHI  +LMIVD L KG P K+F  HV+ M
Sbjct: 21  SENNKYSKGAKNMELKYFG-----SEHRVLIEHITLNLMIVDILMKGFPSKVFGSHVENM 75

Query: 253 GI 254
           G+
Sbjct: 76  GM 77


>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
           polymerase chr05_pseudomolecule_IMGAG_V3
           33218578-33217607 H EGN_Mt090430 20090702
          Length = 309

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 115 SRKSTFGYLFLLTRGVIS*KSGK*SVIATSTMEAEFVACFEATVHALWLRNFVSGLGI-V 173
           +R+ST GYL  L    IS K+ K S ++ S+ EAE+ A  +A    +WLR+ +S L +  
Sbjct: 165 TRRSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHY 224

Query: 174 DSIARSLIIFCDNSAAVFFSKNNKYSKGAKHMDLKYLSVKEEVHKHKVSIEHIGTDLMIV 233
           DS     ++ CDN AA+  + N  Y +  KH+++    ++  + +  +S  ++ T     
Sbjct: 225 DS---PTVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQA 281

Query: 234 DPLTKGLPPKIFTGHVDRMGI 254
           D  TK L  K F     ++G+
Sbjct: 282 DIFTKALGAKQFQELTFKLGV 302


>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
            EGN_Mt090430 20090702
          Length = 1396

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 114  DSRKSTFGYLFLLTRGVIS*KSGK*SVIATSTMEAEFVACFEATVHALWLRNFVSGLGIV 173
            D+R+S  G  F L   +IS ++ K   ++ S+ EAE+ A   AT    WL   +  L + 
Sbjct: 1231 DTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEYRALASATCELQWLIYLLQDLHV- 1289

Query: 174  DSIARSLIIFCDNSAAVFFSKNNKYSKGAKHMDLKYLSVKEEVHKHKVSIEHIGTDLMIV 233
             +  +  ++FCDN +A+  + N  + +  KH+++    V+E++H   + +  + +   + 
Sbjct: 1290 -TCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIVREKLHSGILKLLPVSSKEQVA 1348

Query: 234  DPLTKGLPPKIF 245
            D  TK L P+ F
Sbjct: 1349 DFFTKSLHPQPF 1360


>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
            EGN_Mt090430 20090702
          Length = 1414

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 73/143 (51%), Gaps = 2/143 (1%)

Query: 114  DSRKSTFGYLFLLTRGVIS*KSGK*SVIATSTMEAEFVACFEATVHALWLRNFVSGLGIV 173
            D+R+S  G  F L   +IS ++ K   ++ S+ EAE+ A   AT    W+   +  L   
Sbjct: 1257 DTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATCELQWILYLLKDLHT- 1315

Query: 174  DSIARSLIIFCDNSAAVFFSKNNKYSKGAKHMDLKYLSVKEEVHKHKVSIEHIGTDLMIV 233
             +  +  +++CDN +A+  + N  + +  KH+++    +++++    + +  + +   + 
Sbjct: 1316 -TCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVLKLLTVSSQDQVA 1374

Query: 234  DPLTKGLPPKIFTGHVDRMGIID 256
            D  TK L PK F   + ++G+I+
Sbjct: 1375 DFFTKALLPKPFNILLSKLGLIN 1397


>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
            transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
            EGN_Mt090430 20090702
          Length = 1413

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 114  DSRKSTFGYLFLLTRGVIS*KSGK*SVIATSTMEAEFVACFEATVHALWLRNFVSGLGIV 173
            DSR+S  G  F L   +IS K+ K   ++ S+ EAE+ A   AT    WL   +  L + 
Sbjct: 1248 DSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAATCELQWLLYLLHDLHV- 1306

Query: 174  DSIARSLIIFCDNSAAVFFSKNNKYSKGAKHMDLKYLSVKEEVHKHKVSIEHIGTDLMIV 233
             +  +  +++CDN +A+  + N  + +  KH+++    V+E++    + +  + +   + 
Sbjct: 1307 -TTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQACIMKLLPVTSADQLA 1365

Query: 234  DPLTKGLPPKIFTGHVDRMGIID 256
            D  TK L P+ F   + ++G+++
Sbjct: 1366 DFFTKPLLPQPFHTLLFKLGMLN 1388


>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
           EGN_Mt090430 20090702
          Length = 563

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 2/103 (1%)

Query: 121 GYLFLLTRGVIS*KSGK*SVIATSTMEAEFVACFEATVHALWLRNFVSGLGIVDSIARSL 180
            +LF+L    IS  S K  ++A S+ E E+V    A   A WL+N +    I   + + +
Sbjct: 462 SFLFMLQGAPISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVLEQSMI--KLKQPI 519

Query: 181 IIFCDNSAAVFFSKNNKYSKGAKHMDLKYLSVKEEVHKHKVSI 223
            +  DN  A+  +KN+     +KH++ K+  ++++V+K K++I
Sbjct: 520 KLLIDNKYAINLAKNHISHGKSKHIETKFHYLRDQVNKCKINI 562


>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
           fold, related chr05_pseudomolecule_IMGAG_V3
           36507044-36505941 H EGN_Mt090430 20090702
          Length = 367

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 139 SVIATSTMEAEFVACFEATVHALWLRNFVSGLGIVDSIARSLIIFCDNSAAVFFSKNNKY 198
           + ++ S+ EAE+ A         WL   +    +        +++CD+ +A   + N  +
Sbjct: 247 TTVSKSSSEAEYRAMATTVCEIQWLTYLLQDFNL--QFHTPALLYCDSQSARHIAANTSF 304

Query: 199 SKGAKHMDLKYLSVKEEVHKHKVSIEHIGTDLMIVDPLTKGLPPKIFTGHVDRMGIID 256
            +  KH++L    V+E++ +    +  + +   + D LTK L P  F+  + ++G+ D
Sbjct: 305 HERTKHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPLDPLPFSNFISKLGLKD 362