Jatropha Genome Database

JcCA0287661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0287661.10 - phase: 0 /pseudo
         (74 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g019850.1 Cyclin-like F-box chr01_pseudomolecule_IMGA...    49   4e-07
IMGA|Medtr7g068210.1 Cyclin-like F-box chr07_pseudomolecule_IMGA...    49   7e-07
IMGA|Medtr7g068200.1 Cyclin-like F-box chr07_pseudomolecule_IMGA...    48   1e-06
IMGA|Medtr7g087590.1 Cyclin-like F-box chr07_pseudomolecule_IMGA...    48   1e-06
IMGA|Medtr3g029280.1 Cyclin-like F-box; F-box protein interactio...    47   3e-06
IMGA|Medtr6g092660.1 Cyclin-like F-box chr06_pseudomolecule_IMGA...    45   7e-06

>IMGA|Medtr1g019850.1 Cyclin-like F-box
          chr01_pseudomolecule_IMGAG_V3 4177566-4177180 H
          EGN_Mt090430 20090702
          Length = 128

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 27/44 (61%)

Query: 2  ANLHSDLITEILLFLPVKPLWHLRCVSKQFCNLIDSPNFKKAHL 45
          A L  DLI E+L FLPVK L   RCVSK +  LI  P F K HL
Sbjct: 6  AVLSEDLIVEVLSFLPVKSLLQFRCVSKSWKTLISDPTFVKLHL 49


>IMGA|Medtr7g068210.1 Cyclin-like F-box
          chr07_pseudomolecule_IMGAG_V3 13922239-13922683 H
          EGN_Mt090430 20090702
          Length = 132

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 29/43 (67%)

Query: 4  LHSDLITEILLFLPVKPLWHLRCVSKQFCNLIDSPNFKKAHLN 46
          L  +LI E+L FLPVK L  L+CVSK +  LI  P+F K HLN
Sbjct: 13 LPGELIVEVLSFLPVKSLMRLKCVSKSWKYLISEPSFAKLHLN 55


>IMGA|Medtr7g068200.1 Cyclin-like F-box
          chr07_pseudomolecule_IMGAG_V3 13915779-13916214 H
          EGN_Mt090430 20090702
          Length = 129

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 29/43 (67%)

Query: 4  LHSDLITEILLFLPVKPLWHLRCVSKQFCNLIDSPNFKKAHLN 46
          L  +LI E+L FLPVK L  L+CVSK +  LI  P+F K HLN
Sbjct: 13 LPGELIVEVLSFLPVKSLMRLKCVSKSWKYLISEPSFAKLHLN 55


>IMGA|Medtr7g087590.1 Cyclin-like F-box
          chr07_pseudomolecule_IMGAG_V3 18825034-18824025 H
          EGN_Mt090430 20090702
          Length = 110

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 4  LHSDLITEILLFLPVKPLWHLRCVSKQFCNLIDSPNFKKAHLN 46
          L  DLITEIL FLPVK +   RCVS+ + +L  +P+F K HLN
Sbjct: 19 LPDDLITEILPFLPVKSILQFRCVSESWKSLTSNPSFVKLHLN 61


>IMGA|Medtr3g029280.1 Cyclin-like F-box; F-box protein interaction
          domain chr03_pseudomolecule_IMGAG_V3 7709959-7708124 H
          EGN_Mt090430 20090702
          Length = 343

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 28/45 (62%)

Query: 1  MANLHSDLITEILLFLPVKPLWHLRCVSKQFCNLIDSPNFKKAHL 45
          +  L  DLI EIL  LPVK L+ LRCV K F +LI  P F K HL
Sbjct: 17 LPTLPFDLIAEILCRLPVKFLFQLRCVCKFFHSLISDPKFAKNHL 61


>IMGA|Medtr6g092660.1 Cyclin-like F-box
          chr06_pseudomolecule_IMGAG_V3 19514566-19518700 E
          EGN_Mt090430 20090702
          Length = 130

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 28/41 (68%)

Query: 6  SDLITEILLFLPVKPLWHLRCVSKQFCNLIDSPNFKKAHLN 46
          SDLI  IL FLPVK +  L+ VSK +  LI SP+F K HLN
Sbjct: 14 SDLIAIILTFLPVKTITQLKLVSKSWNTLITSPSFIKIHLN 54