Jatropha Genome Database

JcCA0286981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286981.10 + phase: 0 /partial
         (176 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g096580.1 RhoGAP; Pleckstrin homology-type chr05_pseu...   300   4e-82
IMGA|Medtr3g149080.1 RhoGAP; Pleckstrin homology-type chr03_pseu...   276   3e-75
IMGA|Medtr5g075000.1 RhoGAP; Pleckstrin homology-type chr05_pseu...   251   2e-67

>IMGA|Medtr5g096580.1 RhoGAP; Pleckstrin homology-type
           chr05_pseudomolecule_IMGAG_V3 38375642-38385231 E
           EGN_Mt090430 20090702
          Length = 859

 Score =  300 bits (767), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 138/176 (78%), Positives = 158/176 (89%)

Query: 1   IFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPSTAPQKGGEVNLTLGGIDLNNS 60
           +FKSGPLFISSKGIGW SWKKRWFILTRTSLVFF++DPST PQ+GGEVN+TLGGIDLNNS
Sbjct: 6   VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSTLPQRGGEVNMTLGGIDLNNS 65

Query: 61  GSVVVKADKKLLTVLFPDGRDGRTFTLKAETSEDLYEWKTALENALAQAPSACLAMGQNG 120
           GSVVV+ DKKLLTVLFPDGRDGR FTLKAETSEDL+EWKTALE ALAQAPSA L MG NG
Sbjct: 66  GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLFEWKTALEQALAQAPSAALVMGHNG 125

Query: 121 IFKNDQLEGANDSPEQSKDKVPLQALVIGRPVLLALEDVDGSPSFLEKALRYIEEH 176
           IF+ND  +  + S  Q +DK P+++LV+GRP+LLALED+DG PSFLEKALR++E+H
Sbjct: 126 IFRNDTTDSIDGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKH 181


>IMGA|Medtr3g149080.1 RhoGAP; Pleckstrin homology-type
           chr03_pseudomolecule_IMGAG_V3 38918438-38926130 H
           EGN_Mt090430 20090702
          Length = 743

 Score =  276 bits (707), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 132/176 (75%), Positives = 149/176 (84%)

Query: 1   IFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPSTAPQKGGEVNLTLGGIDLNNS 60
           IFKSGPLF+SSKGIGWTSWKKRWFILT+TSLVFFRSDP+    KG EVNLTLGGIDLNNS
Sbjct: 38  IFKSGPLFLSSKGIGWTSWKKRWFILTQTSLVFFRSDPNAISPKGNEVNLTLGGIDLNNS 97

Query: 61  GSVVVKADKKLLTVLFPDGRDGRTFTLKAETSEDLYEWKTALENALAQAPSACLAMGQNG 120
           GSV+VKADKKLLTV FPDG +GR FTLKAET+EDLYEWK ALE AL +APSA   M QNG
Sbjct: 98  GSVIVKADKKLLTVQFPDGHEGRAFTLKAETTEDLYEWKIALEKALEKAPSAANGMEQNG 157

Query: 121 IFKNDQLEGANDSPEQSKDKVPLQALVIGRPVLLALEDVDGSPSFLEKALRYIEEH 176
           IF+NDQ +  + S +Q  +K P ++ VIG P+LLALEDVDGSP+FLEKAL +IEEH
Sbjct: 158 IFRNDQTDSIDISLDQLHEKEPAKSTVIGLPILLALEDVDGSPTFLEKALTFIEEH 213


>IMGA|Medtr5g075000.1 RhoGAP; Pleckstrin homology-type
           chr05_pseudomolecule_IMGAG_V3 27198048-27211234 H
           EGN_Mt090430 20090702
          Length = 947

 Score =  251 bits (640), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 127/194 (65%), Positives = 145/194 (74%), Gaps = 18/194 (9%)

Query: 1   IFKSGPLFISSKG-IGWTSWKKRWFILTRTSLVFFRSDPST-----------------AP 42
           +FK G LF+SSKG IGWTSWKKRWFILT+TSLVFFRSDP                    P
Sbjct: 38  VFKCGTLFLSSKGGIGWTSWKKRWFILTQTSLVFFRSDPCKKIRVPENPTDKTMKLNGVP 97

Query: 43  QKGGEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRTFTLKAETSEDLYEWKTAL 102
           QKG E NLTLGGIDLNNSGSV +KADKKLLTV FP+  DGR  TLKAET+EDLYEWKTAL
Sbjct: 98  QKGNEANLTLGGIDLNNSGSVSIKADKKLLTVQFPNVHDGRVLTLKAETTEDLYEWKTAL 157

Query: 103 ENALAQAPSACLAMGQNGIFKNDQLEGANDSPEQSKDKVPLQALVIGRPVLLALEDVDGS 162
           EN LA APSA   MGQ+GIF++ Q +  +   +Q KDK  +   V+GRP+LLALE+VDG+
Sbjct: 158 ENVLAHAPSATNVMGQSGIFRSYQADSLDIYLDQLKDKETVNYAVLGRPILLALEEVDGT 217

Query: 163 PSFLEKALRYIEEH 176
           PSFLEKALR+IEEH
Sbjct: 218 PSFLEKALRFIEEH 231