Jatropha Genome Database

JcCA0286161.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286161.40 - phase: 0 /partial
         (93 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g099370.1 Amidase chr01_pseudomolecule_IMGAG_V3 20289...   127   1e-30
IMGA|Medtr4g154900.1 Amidase; chr04_pseudomolecule_IMGAG_V3 3813...    96   4e-21

>IMGA|Medtr1g099370.1 Amidase chr01_pseudomolecule_IMGAG_V3
           20289928-20293602 F EGN_Mt090430 20090702
          Length = 423

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 75/85 (88%)

Query: 1   DFGILAIPTVPGPAPKLNTDPTTLEVFRAKAFSLLSIAGVSGFCQVSIPLGMHDDLPLSI 60
           DFG+L IPTVPGP PKL T+ + LE+FRA+AFSLLSI GVSGFCQVSIPLGM++DLP S+
Sbjct: 339 DFGVLMIPTVPGPPPKLQTNSSDLEIFRARAFSLLSIVGVSGFCQVSIPLGMYNDLPASV 398

Query: 61  SLLAKNGSDGFLLNVVQILYDTLQE 85
           SL+A+NG+D FLL++V+ +YD +++
Sbjct: 399 SLVARNGADEFLLHLVESIYDNIEK 423


>IMGA|Medtr4g154900.1 Amidase; chr04_pseudomolecule_IMGAG_V3
           38132384-38125749 E EGN_Mt090430 20090702
          Length = 591

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 64/90 (71%)

Query: 1   DFGILAIPTVPGPAPKLNTDPTTLEVFRAKAFSLLSIAGVSGFCQVSIPLGMHDDLPLSI 60
           D GIL IPTV  P PKL       + ++++AFSLLSIA +SG CQV++PLG +D  P+S+
Sbjct: 371 DEGILVIPTVADPPPKLGGKEILSQDYQSRAFSLLSIASISGCCQVTVPLGFYDKYPVSV 430

Query: 61  SLLAKNGSDGFLLNVVQILYDTLQEQVAVS 90
           SL+A+ G D FLL+ ++ +Y +LQEQ  ++
Sbjct: 431 SLIARYGGDRFLLDTLKTMYTSLQEQADIA 460