Jatropha Genome Database

JcCA0286161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286161.20 - phase: 0 /pseudo/partial
         (111 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g099360.1 Zinc finger, RING-type chr01_pseudomolecule...    60   3e-10

>IMGA|Medtr1g099360.1 Zinc finger, RING-type
           chr01_pseudomolecule_IMGAG_V3 20287188-20289387 E
           EGN_Mt090430 20090702
          Length = 269

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 34/52 (65%)

Query: 60  GFNIEAYDDVYTQQLGWNNPGATGESADVEPSVAIPAVPYLYSFDDDSDETD 111
           G NIEAYD VY Q+LGW++PG   E +  E       +PYLY FDDDSD T+
Sbjct: 218 GLNIEAYDAVYIQRLGWSSPGENTEVSQNELVDRTTVIPYLYIFDDDSDGTE 269