Jatropha Genome Database

JcCA0286161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286161.10 - phase: 0 
         (88 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g099370.1 Amidase chr01_pseudomolecule_IMGAG_V3 20289...   139   3e-34
IMGA|Medtr4g154900.1 Amidase; chr04_pseudomolecule_IMGAG_V3 3813...    76   3e-15

>IMGA|Medtr1g099370.1 Amidase chr01_pseudomolecule_IMGAG_V3
          20289928-20293602 F EGN_Mt090430 20090702
          Length = 423

 Score =  139 bits (351), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/87 (75%), Positives = 70/87 (80%)

Query: 1  MARNPDYGAFMEKFVLKPTNSSDELPLNGLTFAVKDIFXVDGYVTGFGNPDWARTHLAAT 60
          M    DYGAFMEKF+L P +SS + PLN LTFAVKDIF V GYV GFGNPDWARTH AAT
Sbjct: 1  METASDYGAFMEKFILPPNSSSPDFPLNSLTFAVKDIFDVKGYVAGFGNPDWARTHQAAT 60

Query: 61 STAPAVLAILREXATCIGKTVMDEMAY 87
          STAP VLAIL   ATC+GKTVMDEMAY
Sbjct: 61 STAPTVLAILSAGATCVGKTVMDEMAY 87


>IMGA|Medtr4g154900.1 Amidase; chr04_pseudomolecule_IMGAG_V3
           38132384-38125749 E EGN_Mt090430 20090702
          Length = 591

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 46/58 (79%)

Query: 30  LTFAVKDIFXVDGYVTGFGNPDWARTHLAATSTAPAVLAILREXATCIGKTVMDEMAY 87
           LTFA+ D+F ++G+V+ FG+P+WARTH  A+ST+PAV  +++  ATCI  TV+D ++Y
Sbjct: 63  LTFAISDLFDIEGHVSTFGHPEWARTHEPASSTSPAVSTLVQSGATCIATTVLDNLSY 120