Jatropha Genome Database

JcCA0285981.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285981.30 + phase: 0 /pseudo/partial
         (221 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g125250.1 nucleotide binding, putative chr04_pseudomo...   306   7e-84
IMGA|Medtr3g138220.1 Lissencephaly type-1-like homology motif; W...    48   5e-06

>IMGA|Medtr4g125250.1 nucleotide binding, putative
           chr04_pseudomolecule_IMGAG_V3 29500029-29511825 E
           EGN_Mt090430 20090702
          Length = 835

 Score =  306 bits (783), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 144/206 (69%), Positives = 167/206 (81%)

Query: 1   METDEEQPVLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSKVLLHRFNWQRLWTISP 60
           ME DE   VLPFQLQFDKP+ASQ+KIAEWNPEKDLLAMV++DSK+LLHRFNWQRLWTI+P
Sbjct: 1   MEMDEACRVLPFQLQFDKPLASQVKIAEWNPEKDLLAMVSDDSKILLHRFNWQRLWTITP 60

Query: 61  GKCITSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRSLKSHTVAVVCLNWEEDGQLKRI 120
           GKC+TSLCWRPDGKAIAVGL+DGT+SL+DVENGKLLRSLKSH  A++CLNWEED  L   
Sbjct: 61  GKCVTSLCWRPDGKAIAVGLDDGTLSLYDVENGKLLRSLKSHCAAIICLNWEEDSHLITD 120

Query: 121 DCCNFSTYEDXXXXXXXXXXXXXXXXGVVSGDAGFMDDNEDSYQELSNSSYQQFNILCSA 180
           D  + S YED                G+VSGD GFMDD +DS++ELSNSS+Q+FN+LCS 
Sbjct: 121 DHYHTSKYEDRTSRFFPPAPKIPRMPGLVSGDNGFMDDGDDSFEELSNSSHQRFNVLCSG 180

Query: 181 DRDGSICFSIFGIFPIGKIVSYXLVF 206
           D+DG+ICFSIFGIFPIGK   + L F
Sbjct: 181 DKDGNICFSIFGIFPIGKTNIHNLTF 206


>IMGA|Medtr3g138220.1 Lissencephaly type-1-like homology motif; WD40
           associated region in TFIID subunit; WD40-like;
           chr03_pseudomolecule_IMGAG_V3 35308512-35298876 E
           EGN_Mt090430 20090702
          Length = 669

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 18/106 (16%)

Query: 22  SQIKIAEWNPEKDLLAMVTEDSKVLLHRFNWQRLWTISPGKC----------ITSLCWRP 71
           S +   +W+   + +A  + D  V        RLW +  G+C          I SL   P
Sbjct: 504 SDVDCVQWHANCNYIATGSSDKTV--------RLWDVQSGECVRVFVGHRGMILSLSMSP 555

Query: 72  DGKAIAVGLEDGTISLHDVENGKLLRSLKSHTVAVVCLNWEEDGQL 117
           DG+ +A G EDGTI + D+ +G+ +  L  HT  V  L +  +G +
Sbjct: 556 DGRYMASGDEDGTIMMWDLSSGRCVTPLVGHTSCVWSLAFSSEGSI 601