Jatropha Genome Database

JcCA0285281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285281.10 + phase: 0 /partial
         (129 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g025660.1 Amino acid-binding ACT chr07_pseudomolecule...   170   1e-43
IMGA|Medtr7g025660.2 ACT domain-containing protein, putative chr...   168   7e-43
IMGA|Medtr2g114630.1 Amino acid-binding ACT chr02_pseudomolecule...   133   2e-32
IMGA|Medtr7g124000.1 Amino acid-binding ACT chr07_pseudomolecule...   122   3e-29

>IMGA|Medtr7g025660.1 Amino acid-binding ACT
           chr07_pseudomolecule_IMGAG_V3 6331737-6326317 E
           EGN_Mt090430 20090702
          Length = 418

 Score =  170 bits (431), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 102/127 (80%), Gaps = 5/127 (3%)

Query: 1   MGIPTSDDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRW 60
           MGIP SDD+V+IQHAK + +P++VTVNCPDKAGLGCDLCRIILEFGL ITRAD STDGRW
Sbjct: 1   MGIP-SDDLVVIQHAKNANEPTIVTVNCPDKAGLGCDLCRIILEFGLRITRADISTDGRW 59

Query: 61  CYIVFWVVPDSTSSSHKLDWDSLKNRLSFASPPCLIPFYFDQKSNGPSLPPLYLLKFCFV 120
           C+IVFWV+P    +S K+DW++LK RL    P CL  + F+Q++  PS PP+YLLK   +
Sbjct: 60  CFIVFWVIPH--PASLKIDWENLKTRLLSPCPSCLFSYNFNQRN--PSPPPIYLLKVWII 115

Query: 121 DRKGLLH 127
           D+KGLLH
Sbjct: 116 DQKGLLH 122


>IMGA|Medtr7g025660.2 ACT domain-containing protein, putative
           chr07_pseudomolecule_IMGAG_V3 6331737-6329667 E
           EGN_Mt090430 20090702
          Length = 170

 Score =  168 bits (425), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 102/127 (80%), Gaps = 5/127 (3%)

Query: 1   MGIPTSDDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRW 60
           MGIP SDD+V+IQHAK + +P++VTVNCPDKAGLGCDLCRIILEFGL ITRAD STDGRW
Sbjct: 1   MGIP-SDDLVVIQHAKNANEPTIVTVNCPDKAGLGCDLCRIILEFGLRITRADISTDGRW 59

Query: 61  CYIVFWVVPDSTSSSHKLDWDSLKNRLSFASPPCLIPFYFDQKSNGPSLPPLYLLKFCFV 120
           C+IVFWV+P    +S K+DW++LK RL    P CL  + F+Q++  PS PP+YLLK   +
Sbjct: 60  CFIVFWVIPH--PASLKIDWENLKTRLLSPCPSCLFSYNFNQRN--PSPPPIYLLKVWII 115

Query: 121 DRKGLLH 127
           D+KGLLH
Sbjct: 116 DQKGLLH 122


>IMGA|Medtr2g114630.1 Amino acid-binding ACT
           chr02_pseudomolecule_IMGAG_V3 27133348-27130984 E
           EGN_Mt090430 20090702
          Length = 421

 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 78/121 (64%), Gaps = 3/121 (2%)

Query: 7   DDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRWCYIVFW 66
           DD V IQ      DP ++TVNCPDK GL CD+CR IL FGL I + D STDG WCYIV W
Sbjct: 8   DDSVQIQLGNKPGDPFIITVNCPDKTGLACDICRFILHFGLCILKGDVSTDGVWCYIVLW 67

Query: 67  VVPDSTSSSHKLDWDSLKNRLSFASPPCLIPFYFDQKSNGPSLPPLYLLKFCFVDRKGLL 126
           V+P S     ++ +  LK+RL    PPC+  FY  QK    S  P+YLLKFC +DRKGLL
Sbjct: 68  VIPQSILLP-RMSYSYLKDRLQAICPPCVASFYLVQKPTTSS--PVYLLKFCCLDRKGLL 124

Query: 127 H 127
           H
Sbjct: 125 H 125


>IMGA|Medtr7g124000.1 Amino acid-binding ACT
           chr07_pseudomolecule_IMGAG_V3 29027468-29030623 E
           EGN_Mt090430 20090702
          Length = 405

 Score =  122 bits (307), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 82/132 (62%), Gaps = 13/132 (9%)

Query: 1   MGIPTSDDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRW 60
           MGI   DDVV+++  +   + +++TVNCPDK GLG DLCRIIL F L+I RAD STDG+W
Sbjct: 1   MGI-LHDDVVIMREPEKEGETTIITVNCPDKTGLGSDLCRIILLFHLTILRADVSTDGKW 59

Query: 61  CYIVFWVVPDSTSSSHKLDWDSLKNRLSFASPPC-----LIPFYFDQKSNGPSLPPLYLL 115
           CYIVFWVV        K  W  LK RL  A P C        F  D ++  P  P ++LL
Sbjct: 60  CYIVFWVV-----GKEKTRWSLLKKRLIAACPTCSSASGFSYFCSDLQNQKP--PDVFLL 112

Query: 116 KFCFVDRKGLLH 127
           KFC  DRKGLLH
Sbjct: 113 KFCCKDRKGLLH 124