Jatropha Genome Database

JcCA0285211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285211.10 + phase: 0 
         (116 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g110600.1 binding, putative chr04_pseudomolecule_IMGA...   159   4e-40

>IMGA|Medtr4g110600.1 binding, putative
           chr04_pseudomolecule_IMGAG_V3 25149855-25147117 F
           EGN_Mt090430 20090702
          Length = 169

 Score =  159 bits (402), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/116 (67%), Positives = 94/116 (81%), Gaps = 1/116 (0%)

Query: 1   MADRDRGDWEFYLRTLSSSARDSNLASDPASDPSLLQSIKRLYELCKQENSEDLVARVYP 60
           M++RD G W+F+LRTLS SARDSN A+DPASDPSLL S+K+L+ELCK EN+EDLVARVYP
Sbjct: 1   MSERDTG-WDFHLRTLSISARDSNTANDPASDPSLLHSVKKLHELCKTENNEDLVARVYP 59

Query: 61  QINRLFQRSVNSLAQSKSSYGXXXXXXXXXXXXXGEVVLHDADPSLKTFFRSCLSR 116
           QIN++FQR+V SL+ S++S G             GEVVLHDADPSL+TFFRSCLSR
Sbjct: 60  QINKIFQRAVASLSLSQTSNGLLLLAILQFYLDFGEVVLHDADPSLRTFFRSCLSR 115