Jatropha Genome Database

JcCA0283211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0283211.10 + phase: 0 /pseudo/partial
         (271 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g110840.1 Zinc finger, C2H2-type chr07_pseudomolecule...   230   5e-61

>IMGA|Medtr7g110840.1 Zinc finger, C2H2-type
           chr07_pseudomolecule_IMGAG_V3 25876673-25879946 E
           EGN_Mt090430 20090702
          Length = 390

 Score =  230 bits (587), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 161/226 (71%), Gaps = 10/226 (4%)

Query: 23  DCVAAFLLQRAFNMYEFEDVRKLAAELCGRIHPQVLFPIVSSLLEDAAKCEDVLIIKACL 82
           +C+AAFLL RA   +EFEDVRKL+AELCGRIHPQVLFP++ S L+ A   ++V  IKACL
Sbjct: 45  ECIAAFLLNRALCEFEFEDVRKLSAELCGRIHPQVLFPVICSKLDRAVDLKNVPEIKACL 104

Query: 83  FAICTSLVVRGRESVSHPIIIQIRKTIETVLLWPSLDGDEVSKAQHGCIDCLALMICAEL 142
           F+ICTSLVVRG ES+SHP++  I++ IETVLLWP L+ D VSK QHGCIDCLALMI  EL
Sbjct: 105 FSICTSLVVRGWESLSHPLVHSIKRMIETVLLWPCLNADSVSKVQHGCIDCLALMISVEL 164

Query: 143 PNLESFKN--SEKFSLLGKTSYAGWYLIPRNSILAYVIHQLTSDKNEVPVC-TLTSENCE 199
              ES  +   ++  ++GK + AG      NSI+ YV++Q  +DK E+     L  + CE
Sbjct: 165 QAEESITDYMPDRVLVIGKKA-AG------NSIITYVMNQFFNDKEELSSTPELGEDKCE 217

Query: 200 HDAPVLCSFRLCMANVLLSACQKLSDSGKKLFARETLPRLISSVEV 245
             A V   FRLCM NVL+S CQK+S+S KKLFA + LP L+ S+++
Sbjct: 218 SVAAVPLYFRLCMGNVLISTCQKISESCKKLFAAQVLPFLLHSLKL 263