Jatropha Genome Database

JcCA0282441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0282441.10 + phase: 2 /pseudo/partial
         (279 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g080430.1 Glycoside hydrolase, family 20; ; chr02_pse...    78   5e-15

>IMGA|Medtr2g080430.1 Glycoside hydrolase, family 20; ;
           chr02_pseudomolecule_IMGAG_V3 18523171-18526823 E
           EGN_Mt090430 20090702
          Length = 568

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 105/258 (40%), Gaps = 58/258 (22%)

Query: 8   WPSKDCKQP----LDVSNEFTFKVIDGILSDFSXXXXXXXXHLGGDEVDTSCWSSTSRIQ 63
           WP +   +P    L+  N  T++V+  ++ D +        H G DEV   CW +   IQ
Sbjct: 280 WPDRLAAEPGTGHLNPLNPKTYQVLKNVIRDVTTLFPEQFYHSGADEVVPGCWKTDPTIQ 339

Query: 64  KWLEKHGMNASQAYQYFVLRAQKIALSHGYEIINWEE-----TFNNFGNKLSRKTVVHNX 118
           K+L  +G   SQ  + F+       LS    ++ WE+     T +     L ++ V+   
Sbjct: 340 KFLSNNG-TLSQVLETFINNTLPFILSLNRTVVYWEDVLLDDTVHVPSTILPKEHVILQT 398

Query: 119 ADPLTDHREIHYLVCSAYNFPCRLXXXXXXXXXXXXLRCIVSNQDKWYLD--HLD-TSWE 175
            +    H     +V S Y                   R IVS+ D +YLD  H D T   
Sbjct: 399 WN--NGHNNTKRIVSSGY-------------------RAIVSSSDFYYLDCGHGDFTGNN 437

Query: 176 KFYMNEPLANIND------------------------TEQQQLVIGGEVCMWGEMVDGSD 211
             Y N+  ++ ND                         E+ +LV+GGEV +W E  D + 
Sbjct: 438 SIYDNQTGSDKNDGGSWCGPFKTWQNIYNYDITYGLTEEEAKLVLGGEVALWSEQADETV 497

Query: 212 IEQTIWPRAAAAAERLWT 229
           ++  +WPR +A AE LW+
Sbjct: 498 LDSRLWPRTSAMAESLWS 515