Jatropha Genome Database

JcCA0281241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281241.10 - phase: 0 /partial
         (108 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g031100.1 Aprataxin, putative chr01_pseudomolecule_IM...   166   4e-42

>IMGA|Medtr1g031100.1 Aprataxin, putative
           chr01_pseudomolecule_IMGAG_V3 7472764-7472453 E
           EGN_Mt090430 20090702
          Length = 103

 Score =  166 bits (419), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 87/98 (88%)

Query: 4   MRQLHLHVISQDFNSDNLKNKKHWNSFTTAFFRDSVDVIEEIRNHGKATLKDDDSYLSTE 63
           MRQLHLHVISQDF+S +LKNKKHWNSF TAFFRDSVD+I+E+  HGKATLKDDD  LS E
Sbjct: 1   MRQLHLHVISQDFDSKHLKNKKHWNSFNTAFFRDSVDIIDEVSIHGKATLKDDDKLLSME 60

Query: 64  LRCHRCRSAHPNIPRLKSHIKNCRAPFPPILLENCRLV 101
           LRCH+C+SAHPNIPRLKSHI +C+APFP  LLEN RLV
Sbjct: 61  LRCHKCKSAHPNIPRLKSHISSCQAPFPANLLENGRLV 98