Jatropha Genome Database

JcCA0281201.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281201.20 - phase: 0 /partial/short
         (34 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g144850.1 Glycoside hydrolase, family 77 chr03_pseudo...    59   9e-10

>IMGA|Medtr3g144850.1 Glycoside hydrolase, family 77
           chr03_pseudomolecule_IMGAG_V3 37673305-37667776 E
           EGN_Mt090430 20090702
          Length = 573

 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 31/34 (91%)

Query: 1   FGNWGWRIPSSMSFDQMAKEAKRLRGLLSMYGRM 34
           FGNWGWR+PSS+SFD++ +EA RL+ +LSMYGR+
Sbjct: 540 FGNWGWRVPSSVSFDKLDREATRLKEMLSMYGRL 573