Jatropha Genome Database

JcCA0280911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0280911.10 - phase: 0 
         (203 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g087180.2 RNA polymerase Rpb7, N-terminal chr08_pseud...   171   2e-43
IMGA|Medtr8g087180.1 RNA polymerase Rpb7, N-terminal chr08_pseud...   167   3e-42
IMGA|Medtr8g087180.3 RNA polymerase Rpb7, N-terminal chr08_pseud...   141   3e-34
IMGA|Medtr8g087180.4 RNA polymerase Rpb7, N-terminal chr08_pseud...    86   1e-17

>IMGA|Medtr8g087180.2 RNA polymerase Rpb7, N-terminal
           chr08_pseudomolecule_IMGAG_V3 18066643-18071126 F
           EGN_Mt090430 20090702
          Length = 192

 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 121/192 (63%), Gaps = 15/192 (7%)

Query: 1   MFYLSLVEHTXXXXXXXXXXXXDDAIKKELENIFLDKTMEVVFVMKVISNLGLCISIYDL 60
           MFYLS +EH              +AI+ ELE +FLDK         VI  LGLCIS+YD+
Sbjct: 1   MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDK---------VIQKLGLCISVYDI 51

Query: 61  RNIEGGFIFPGDGASTYTVKFRMVVFRPFVGETIVAKLKESKEDGLRLSLGFFDDIHIPA 120
            +IEGG IFPG GA TY V F +++FRPF GE I AK+     DG+RLSLGFF+DI+IP 
Sbjct: 52  TSIEGGSIFPGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFEDIYIPT 111

Query: 121 HRLPKPCHFVPNSEKRDEVTWIWDYPGNEDAVFSIDGIDEIKFKVDSVKYPPVPLEQ--Q 178
           H +P P +++  +  R    W W+Y G E   F+I+  +EI+F+V SV YP +P+EQ  +
Sbjct: 112 HHMPYPSYYISKNNTRK---WTWEY-GEETDEFNIEISNEIRFQVLSVSYPTIPVEQAKE 167

Query: 179 EKPFAPMMITVS 190
            KPFAPM++  S
Sbjct: 168 SKPFAPMVVNGS 179


>IMGA|Medtr8g087180.1 RNA polymerase Rpb7, N-terminal
           chr08_pseudomolecule_IMGAG_V3 18066643-18071126 F
           EGN_Mt090430 20090702
          Length = 193

 Score =  167 bits (423), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 121/193 (62%), Gaps = 16/193 (8%)

Query: 1   MFYLSLVEHTXXXXXXXXXXXXDDAIKKELENIFLDKTMEVVFVMKVISNLGLCISIYDL 60
           MFYLS +EH              +AI+ ELE +FLDK         VI  LGLCIS+YD+
Sbjct: 1   MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDK---------VIQKLGLCISVYDI 51

Query: 61  RNIEGGFIFPGDGASTYTVKFRMVVFRPFVGETIVAKLKESKEDGLRLSLGFFDDIHIPA 120
            +IEGG IFPG GA TY V F +++FRPF GE I AK+     DG+RLSLGFF+DI+IP 
Sbjct: 52  TSIEGGSIFPGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFEDIYIPT 111

Query: 121 HRLPKPCHFVPNSEKRDEVTWIWDYPGNEDAVFSIDGIDE-IKFKVDSVKYPPVPLEQ-- 177
           H +P P +++  +  R    W W+Y G E   F+I+  +E I+F+V SV YP +P+EQ  
Sbjct: 112 HHMPYPSYYISKNNTRK---WTWEY-GEETDEFNIEISNEVIRFQVLSVSYPTIPVEQAK 167

Query: 178 QEKPFAPMMITVS 190
           + KPFAPM++  S
Sbjct: 168 ESKPFAPMVVNGS 180


>IMGA|Medtr8g087180.3 RNA polymerase Rpb7, N-terminal
           chr08_pseudomolecule_IMGAG_V3 18066643-18071126 F
           EGN_Mt090430 20090702
          Length = 160

 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 98/161 (60%), Gaps = 13/161 (8%)

Query: 1   MFYLSLVEHTXXXXXXXXXXXXDDAIKKELENIFLDKTMEVVFVMKVISNLGLCISIYDL 60
           MFYLS +EH              +AI+ ELE +FLDK         VI  LGLCIS+YD+
Sbjct: 1   MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDK---------VIQKLGLCISVYDI 51

Query: 61  RNIEGGFIFPGDGASTYTVKFRMVVFRPFVGETIVAKLKESKEDGLRLSLGFFDDIHIPA 120
            +IEGG IFPG GA TY V F +++FRPF GE I AK+     DG+RLSLGFF+DI+IP 
Sbjct: 52  TSIEGGSIFPGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFEDIYIPT 111

Query: 121 HRLPKPCHFVPNSEKRDEVTWIWDYPGNEDAVFSIDGIDEI 161
           H +P P +++  +  R    W W+Y G E   F+I+  +EI
Sbjct: 112 HHMPYPSYYISKNNTRK---WTWEY-GEETDEFNIEISNEI 148


>IMGA|Medtr8g087180.4 RNA polymerase Rpb7, N-terminal
           chr08_pseudomolecule_IMGAG_V3 18067690-18071126 F
           EGN_Mt090430 20090702
          Length = 103

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 61/89 (68%), Gaps = 6/89 (6%)

Query: 104 DGLRLSLGFFDDIHIPAHRLPKPCHFVPNSEKRDEVTWIWDYPGNEDAVFSIDGIDEIKF 163
           DG+RLSLGFF+DI+IP H +P P +++  +  R    W W+Y G E   F+I+  +EI+F
Sbjct: 6   DGVRLSLGFFEDIYIPTHHMPYPSYYISKNNTRK---WTWEY-GEETDEFNIEISNEIRF 61

Query: 164 KVDSVKYPPVPLEQ--QEKPFAPMMITVS 190
           +V SV YP +P+EQ  + KPFAPM++  S
Sbjct: 62  QVLSVSYPTIPVEQAKESKPFAPMVVNGS 90