Jatropha Genome Database

JcCA0280821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0280821.10 + phase: 0 /partial
         (201 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g104440.1 Raffinose synthase chr05_pseudomolecule_IMG...   201   2e-52
IMGA|Medtr8g121390.1 Raffinose synthase chr08_pseudomolecule_IMG...   175   1e-44
IMGA|Medtr5g074630.1 Raffinose synthase chr05_pseudomolecule_IMG...   162   9e-41
IMGA|Medtr4g136550.1 Raffinose synthase chr04_pseudomolecule_IMG...   112   1e-25
IMGA|Medtr3g114540.1 Raffinose synthase chr03_pseudomolecule_IMG...   106   9e-24
IMGA|Medtr7g133220.1 Raffinose synthase chr07_pseudomolecule_IMG...   101   2e-22

>IMGA|Medtr5g104440.1 Raffinose synthase
           chr05_pseudomolecule_IMGAG_V3 41888825-41893209 F
           EGN_Mt090430 20090702
          Length = 760

 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/219 (47%), Positives = 138/219 (63%), Gaps = 21/219 (9%)

Query: 1   PGRPTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTL 60
           PGRPT+DCLF DPARDG SLLKIWN+N  +GVVGVFNCQGAGWCKV KK  IHD +PGT+
Sbjct: 545 PGRPTKDCLFSDPARDGKSLLKIWNMNDYSGVVGVFNCQGAGWCKVGKKNLIHDENPGTV 604

Query: 61  TASVRATDVDCIAQIAGTDWNGETVVYAYRSGELIRLPKGASVPVTLKVLEYELFHFCPI 120
           T  +RA D+D ++ +A   W G+ V++++  GE++ LPK  S+P+T+K  EYELF   P+
Sbjct: 605 TDIIRAKDIDHLSTVADDKWTGDAVIFSHLRGEVVYLPKDVSIPITMKSREYELFTIVPV 664

Query: 121 KQIACNISFAPIGLLDMFNASGAVDKFE------------------IHSASDKKPELFDG 162
           K++   + FAPIGL+ MFN+ GAV +F                     + S  +P+L   
Sbjct: 665 KELPNGVKFAPIGLIKMFNSGGAVKEFSSGFNGVANVSMKVRGCGLFGAYSSAQPKLI-- 722

Query: 163 EVSSELTTSLGENRSPTATITLKPVPEEEMYRWPVEIQI 201
            V SE      E  S   TI L  VPE+E+Y+W + I +
Sbjct: 723 TVDSEEVEFSYEEESGLVTIDLS-VPEKELYQWNISIDL 760


>IMGA|Medtr8g121390.1 Raffinose synthase
           chr08_pseudomolecule_IMGAG_V3 28117332-28114408 E
           EGN_Mt090430 20090702
          Length = 795

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 102/147 (69%), Gaps = 2/147 (1%)

Query: 1   PGRPTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTL 60
           PGRPT DCLF DPARDG SLLKIWN+N C GV+GV+NCQGA WC  E+K   H+     L
Sbjct: 580 PGRPTADCLFNDPARDGASLLKIWNMNACGGVLGVYNCQGAAWCANERKNAFHETDSAAL 639

Query: 61  TASVRATDVDCIAQ-IAGT-DWNGETVVYAYRSGELIRLPKGASVPVTLKVLEYELFHFC 118
           T  VR  DV  I++ +AG  DWNG+   YA+ S EL+ LP   ++P+TLKVLE+E+F   
Sbjct: 640 TGYVRGRDVHLISEAVAGDGDWNGDCAFYAHHSRELVVLPHNVAMPLTLKVLEHEVFAVA 699

Query: 119 PIKQIACNISFAPIGLLDMFNASGAVD 145
           P+K       FAPIGL++MFNA GAV+
Sbjct: 700 PVKVFNSGYRFAPIGLVNMFNAGGAVE 726


>IMGA|Medtr5g074630.1 Raffinose synthase
           chr05_pseudomolecule_IMGAG_V3 26988896-26984885 E
           EGN_Mt090430 20090702
          Length = 444

 Score =  162 bits (410), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 68/116 (58%), Positives = 90/116 (77%)

Query: 2   GRPTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTLT 61
           GRPT+DCLF DPARDG SLLKIWN+N  +GVVGVFNCQGAGWCKV KK  IHD +PGT+T
Sbjct: 314 GRPTKDCLFSDPARDGKSLLKIWNMNDYSGVVGVFNCQGAGWCKVGKKNLIHDENPGTVT 373

Query: 62  ASVRATDVDCIAQIAGTDWNGETVVYAYRSGELIRLPKGASVPVTLKVLEYELFHF 117
             +RA D+D ++ +A   W G+ +++++  GE++ LPK  S+P+T+K  EYE+F F
Sbjct: 374 DIIRAKDIDHLSTVADDKWTGDAIIFSHLCGEVVYLPKDVSIPITMKSGEYEVFTF 429


>IMGA|Medtr4g136550.1 Raffinose synthase
           chr04_pseudomolecule_IMGAG_V3 33377578-33374117 H
           EGN_Mt090430 20090702
          Length = 836

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 84/153 (54%), Gaps = 13/153 (8%)

Query: 4   PTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTLTAS 63
           PTRDCLF +P  D TS+LKIWN NK  GV+G FNCQGAGW   E K R        +T +
Sbjct: 639 PTRDCLFKNPLFDQTSVLKIWNFNKYGGVIGAFNCQGAGWDPKEHKFRGFPECYKPITGT 698

Query: 64  VRATDVDCIAQIAGTDWNGETVVYAYRSGEL-IRLPKGASVPVTLKVLEYELFHFCPIKQ 122
           V  T+ +            E VVY  ++ EL +  PK   +   ++   +EL++F P+ +
Sbjct: 699 VHVTEAE------------EYVVYFNQAEELRLMTPKSEPIKYIIQPSTFELYNFVPLTK 746

Query: 123 IACNISFAPIGLLDMFNASGAVDKFEIHSASDK 155
           +  NI FAPIGL +MFN+ G V   E   +  K
Sbjct: 747 LGGNIKFAPIGLTNMFNSGGTVLDLEYAESGAK 779


>IMGA|Medtr3g114540.1 Raffinose synthase
           chr03_pseudomolecule_IMGAG_V3 29013492-29016790 E
           EGN_Mt090430 20090702
          Length = 786

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 21/158 (13%)

Query: 4   PTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTLTAS 63
           PTRDCLF DP  DG ++LKIWN+NK TGV+G+FNCQG GWC   ++ +         +AS
Sbjct: 575 PTRDCLFEDPLHDGQTMLKIWNLNKYTGVLGLFNCQGGGWCPETRRNK---------SAS 625

Query: 64  VRATDVDCIAQIAGTDW-NGET----------VVYAYRSGELIRLPKGASVPVTLKVLEY 112
             +  V C A     +W NG++           VY ++  +L  +     + V+L+   +
Sbjct: 626 EFSHLVTCYASPEDIEWCNGKSPMCIKGVDVFAVYFFKEKKLKLMKCSDKLEVSLEPFSF 685

Query: 113 ELFHFCPIKQIACN-ISFAPIGLLDMFNASGAVDKFEI 149
           EL    P++  +   I FAPIGL++M N+ GAV   E 
Sbjct: 686 ELMTVSPVRVFSKGLIQFAPIGLVNMLNSGGAVQSVEF 723


>IMGA|Medtr7g133220.1 Raffinose synthase
           chr07_pseudomolecule_IMGAG_V3 31103102-31108693 H
           EGN_Mt090430 20090702
          Length = 486

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 79/148 (53%), Gaps = 3/148 (2%)

Query: 4   PTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTLTAS 63
           PT DCLF  P  D T +LKIWN NK  GV+G FNCQGAGW   E K R        +  +
Sbjct: 190 PTTDCLFKYPLFDKTIVLKIWNFNKYGGVIGAFNCQGAGWDPKEHKLRGFPECYNPIVGT 249

Query: 64  VRATDVDCIAQIAGTDWNG--ETVVYAYRSGEL-IRLPKGASVPVTLKVLEYELFHFCPI 120
           V  T+V+   +   +      E VVY  ++ EL +  P   S+   ++   +EL++F  +
Sbjct: 250 VHVTEVEWDQKKEASHLGKAEEYVVYFNQAEELCLMTPNSESIQFIIQPSTFELYNFVQV 309

Query: 121 KQIACNISFAPIGLLDMFNASGAVDKFE 148
           K+    I FAPIGL +MFN+ G +   E
Sbjct: 310 KKFGGTIKFAPIGLTNMFNSGGTILDLE 337