Jatropha Genome Database

JcCA0280621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0280621.10 + phase: 0 /pseudo/partial
         (238 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g125610.1 Peroxisomal membrane anchor protein (Pex14p...    89   1e-18

>IMGA|Medtr8g125610.1 Peroxisomal membrane anchor protein (Pex14p)
           chr08_pseudomolecule_IMGAG_V3 29342563-29349913 E
           EGN_Mt090430 20090702
          Length = 523

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 60/91 (65%), Gaps = 15/91 (16%)

Query: 121 QKVKEMKSMSMAIHKLEGQAN-NLGRTSLADQEDYTLSVANHPKQTYVNGKADSDLRSVR 179
           ++V+EMK M+ AI +LEGQ +  + +TSL              KQ   NGKAD DLRSVR
Sbjct: 263 KQVQEMKLMTNAIRRLEGQEDLRVSQTSL--------------KQLVANGKADYDLRSVR 308

Query: 180 SSSPPTSAEPSVAPHPKSYMEIMAMVQRGER 210
           S SPP   EPS  PHPKSYMEIMAMVQRGE+
Sbjct: 309 SLSPPAPVEPSGPPHPKSYMEIMAMVQRGEK 339