Jatropha Genome Database

JcCA0279081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0279081.10 - phase: 0 
         (299 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g127500.1 hypothetical protein chr07_pseudomolecule_I...   153   9e-38

>IMGA|Medtr7g127500.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 29919635-29918243 E
           EGN_Mt090430 20090702
          Length = 289

 Score =  153 bits (387), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 153/306 (50%), Gaps = 38/306 (12%)

Query: 4   VDLETLVSACAGVSCDRKIACETLATTT------TASDNHNQQPQDSETXXXXXXXXXXX 57
           + +ETLVSACAG S DRKIACET A          +S +H   P +S             
Sbjct: 2   LQVETLVSACAGGSTDRKIACETQADDLKTDPPPESSHHHPDSPPES------------- 48

Query: 58  XSFWLSKDAEYDWFDRNAFIERKDSTKGNNSHSANLNPNIIPHSGIQSNSQRFSNLKSKA 117
             FWLS+D E +W DRN   ERK+STKGN+S +     +   +S   SNSQRF+NLKSK 
Sbjct: 49  --FWLSRDEENEWLDRNFIYERKESTKGNSSSTNLNPNSNS-NSNSTSNSQRFANLKSKT 105

Query: 118 SILGLPKPQKSCF-VEARRYCKPGKTRLFPKRXXXXXXXXXXLIEPSSPKVSCMXXXXXX 176
           S++GLPKPQK  F  +  R  KP   +LFPKR           +EPSSPKVSCM      
Sbjct: 106 SMIGLPKPQKPSFDAKNLRNHKPSNIKLFPKR---SASVGKSFVEPSSPKVSCMGKVRSK 162

Query: 177 XXXXXXXXXXXXXXXXXETDNKREKVERKQ-RTGFFSTFRAIFRVTKHNTRNRKDGSLSR 235
                            +T     + ERKQ +  FF +FRAIFR    N  +R + S + 
Sbjct: 163 RGKTSTVTAAAKAAVKEKT----ARTERKQSKHSFFKSFRAIFRSGGRNKHDRMNDSSAL 218

Query: 236 QGSTAKTTITDIRDRLPAGERDSQPRKS----VDSDGFEPAAGTEPVGLGAMKRFASGRK 291
             S+       + D   +  RDS    +    V+S      +  EP GLG M RF SGR+
Sbjct: 219 DSSSITKNTNSVSD---SKARDSTASLNDVSFVESVTRNSVSEGEPPGLGVMMRFTSGRR 275

Query: 292 SDSWVD 297
           S+SWVD
Sbjct: 276 SESWVD 281