Jatropha Genome Database
- JcCA0275841.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0275841.10 + phase: 2 /TE
(259 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H... 114 4e-26
IMGA|Medtr2g034130.1 Polynucleotidyl transferase, Ribonuclease H... 112 2e-25
IMGA|Medtr8g024620.1 hypothetical protein chr08_pseudomolecule_I... 104 5e-23
IMGA|Medtr4g129960.1 Polynucleotidyl transferase, Ribonuclease H... 94 8e-20
IMGA|Medtr5g090160.1 Haem peroxidase, plant/fungal/bacterial chr... 93 1e-19
IMGA|Medtr3g138250.1 RNA-directed DNA polymerase (reverse transc... 88 4e-18
IMGA|Medtr8g037100.1 hypothetical protein chr08_pseudomolecule_I... 87 8e-18
IMGA|Medtr8g133770.1 hypothetical protein chr08_pseudomolecule_I... 84 1e-16
IMGA|Medtr8g093640.1 Polynucleotidyl transferase, Ribonuclease H... 83 1e-16
IMGA|Medtr7g021160.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V... 83 2e-16
IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse transc... 83 2e-16
IMGA|AC225507_9.1 Polynucleotidyl transferase, Ribonuclease H fo... 82 3e-16
IMGA|Medtr5g073410.1 RNA-directed DNA polymerase (reverse transc... 81 5e-16
IMGA|Medtr1g147120.1 Polynucleotidyl transferase, Ribonuclease H... 74 6e-14
IMGA|Medtr8g006140.1 Polynucleotidyl transferase, Ribonuclease H... 74 7e-14
IMGA|Medtr8g005870.1 Polynucleotidyl transferase, Ribonuclease H... 74 7e-14
IMGA|Medtr6g031250.1 Polynucleotidyl transferase, Ribonuclease H... 72 2e-13
IMGA|Medtr3g124260.1 Polynucleotidyl transferase, Ribonuclease H... 72 2e-13
IMGA|Medtr7g107300.1 RNA-directed DNA polymerase (reverse transc... 72 2e-13
IMGA|Medtr1g122150.1 contains similarity to reverse trancriptase... 70 8e-13
IMGA|Medtr4g042860.1 contains similarity to reverse trancriptase... 69 2e-12
IMGA|AC232874_27.1 hypothetical protein AC232874.1 84446-85505 H... 69 2e-12
IMGA|Medtr3g147880.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 68 4e-12
IMGA|Medtr5g040610.1 RNA-directed DNA polymerase (reverse transc... 68 5e-12
IMGA|Medtr4g084370.1 contains similarity to reverse trancriptase... 67 1e-11
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc... 65 3e-11
IMGA|Medtr2g111150.1 probable reverse transcriptase At2g02650 -,... 64 7e-11
IMGA|Medtr3g019330.1 RNA-directed DNA polymerase (reverse transc... 64 8e-11
IMGA|Medtr2g095830.1 Lipocalin chr02_pseudomolecule_IMGAG_V3 220... 63 1e-10
IMGA|Medtr1g089830.1 Polynucleotidyl transferase, Ribonuclease H... 63 2e-10
IMGA|Medtr5g083870.1 RNA-directed DNA polymerase (reverse transc... 62 2e-10
IMGA|Medtr1g016440.1 probable reverse transcriptase At2g02650 -,... 62 2e-10
IMGA|Medtr1g016370.1 probable reverse transcriptase At2g02650 -,... 62 2e-10
IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse transc... 61 6e-10
IMGA|Medtr3g103760.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 61 6e-10
IMGA|AC233662_12.1 Lipocalin AC233662.1 48072-47128 H EGN_Mt0904... 61 7e-10
IMGA|AC233657_3.1 Lipocalin AC233657.1 16055-16999 H EGN_Mt09043... 61 7e-10
IMGA|Medtr2g056130.1 hypothetical protein chr02_pseudomolecule_I... 61 7e-10
IMGA|Medtr3g021630.1 RNA-directed DNA polymerase (reverse transc... 61 7e-10
IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse transc... 60 9e-10
IMGA|AC225611_8.1 contains similarity to reverse trancriptase, r... 59 3e-09
IMGA|Medtr4g033120.1 Polynucleotidyl transferase, Ribonuclease H... 58 4e-09
IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse transc... 57 1e-08
IMGA|Medtr8g034900.1 contains similarity to reverse trancriptase... 57 1e-08
IMGA|Medtr7g077740.1 RNA-directed DNA polymerase (reverse transc... 56 2e-08
IMGA|Medtr7g127430.1 hypothetical protein chr07_pseudomolecule_I... 55 3e-08
IMGA|Medtr1g140870.1 Polynucleotidyl transferase, Ribonuclease H... 55 3e-08
IMGA|Medtr5g068610.1 Polynucleotidyl transferase, Ribonuclease H... 55 4e-08
IMGA|Medtr7g080740.1 RNA-directed DNA polymerase (reverse transc... 55 4e-08
IMGA|Medtr6g094210.1 RNA polymerase Rpb8; chr06_pseudomolecule_I... 54 7e-08
IMGA|Medtr5g088710.1 RNA-directed DNA polymerase (reverse transc... 54 1e-07
IMGA|Medtr1g065590.1 Polynucleotidyl transferase, Ribonuclease H... 53 1e-07
IMGA|Medtr8g103050.1 Polynucleotidyl transferase, Ribonuclease H... 53 1e-07
IMGA|Medtr8g128940.1 RNA-directed DNA polymerase, related chr08_... 53 2e-07
IMGA|Medtr6g080700.1 Putative non-LTR retroelement reverse trans... 52 4e-07
IMGA|Medtr3g036550.1 RNA-directed DNA polymerase (reverse transc... 52 4e-07
IMGA|Medtr3g080050.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 52 4e-07
IMGA|Medtr4g157980.1 contains similarity to reverse trancriptase... 50 8e-07
IMGA|Medtr3g106940.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 50 1e-06
IMGA|Medtr3g039830.1 RNA-directed DNA polymerase (reverse transc... 50 1e-06
IMGA|Medtr2g045730.1 RNA-directed DNA polymerase (reverse transc... 50 1e-06
IMGA|Medtr2g022180.1 hypothetical protein chr02_pseudomolecule_I... 50 1e-06
IMGA|Medtr7g077260.1 RNA-directed DNA polymerase (reverse transc... 49 2e-06
IMGA|Medtr1g133000.1 Putative non-LTR retroelement reverse trans... 49 3e-06
IMGA|Medtr7g105970.1 Polynucleotidyl transferase, Ribonuclease H... 49 3e-06
IMGA|Medtr3g098050.1 RNA-directed DNA polymerase (reverse transc... 48 5e-06
IMGA|Medtr5g102190.1 RNA-directed DNA polymerase (reverse transc... 48 5e-06
IMGA|Medtr3g019780.1 H+-transporting two-sector ATPase, alpha/be... 47 7e-06
IMGA|Medtr4g107980.1 hypothetical protein chr04_pseudomolecule_I... 47 8e-06
IMGA|Medtr3g125040.1 RNA-directed DNA polymerase (reverse transc... 47 1e-05
IMGA|Medtr8g119160.1 hypothetical protein chr08_pseudomolecule_I... 47 1e-05
>IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 19822787-19820648 H
EGN_Mt090430 20090702
Length = 612
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 120/268 (44%), Gaps = 18/268 (6%)
Query: 1 LWKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTP 60
+WK L+ LF + +LI+ PL D W EK GTY++KSAYR+ V ++ +
Sbjct: 213 MWKAPLIHSLFDAQTAELILNTPLQPLVLEDKMIWKGEKNGTYSLKSAYRICVTEIADNS 272
Query: 61 APSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPL 120
+ W W LK+ K+K +WR+ C P + L R V + C C E +
Sbjct: 273 HMHVNGRWNLIWKLKVPPKIKKFLWRVCRGCFPTRARLNSRGVSCPLDCVHCNHNYEDSI 332
Query: 121 HVFVDCGYACEC-----LECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVL 175
H+ ++C + L T+ V+ D + I LQN+ G + + ++
Sbjct: 333 HILIECPKVVQVWRNANLWDTIDRVIHQ-DYNISALIFTLLQNLSSG----KCELMATIM 387
Query: 176 WTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQI-------KTACP-VPVVDQGAA 227
W++W+ RN LW Q+L + L WQ+AQ +T P V + Q
Sbjct: 388 WSLWKCRNMKLWQQQLETDSQVLQRATHVLEEWQTAQRIRSSSSNQTITPQVRSLRQEED 447
Query: 228 VWSTPPAGYLKCNTDAAPPGVNSQIGAG 255
VW P G KCN DA+ +++G G
Sbjct: 448 VWKKPAPGRYKCNIDASFSTSLNRVGLG 475
>IMGA|Medtr2g034130.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 9482517-9480709 E
EGN_Mt090430 20090702
Length = 602
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 33/279 (11%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLL----VPDMT 57
W LL++ F+ D I Q+P+ + D W + G+YTVKS Y +
Sbjct: 202 WNYNLLQQNFLPMDSSQIAQLPIIHPNKPDVLMWMFDLSGSYTVKSGYNAIQNWKATASN 261
Query: 58 NTPAPSLQ-SFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAE 116
++ A S+ + WQ+ W LK + + K+L+WR+ +N LP++ L++R + +LCP C + E
Sbjct: 262 DSSASSVNNTLWQKLWNLKTIPRHKSLLWRILNNSLPLRDNLLRRGIQCSILCPRCNIKE 321
Query: 117 EIPLHVFVDCGYACEC-----LECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQAL 171
E H+F+ C ++ L +PS+ + Q+ DW+ L D V +
Sbjct: 322 ETMTHLFMRCSHSERVWFGSQLSIQMPSI-------SNQQFSDWIAETILNKDSNTVIQV 374
Query: 172 CIVLWTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIKTA------CPVPVVDQG 225
+ +++W RN+ + + P ++ + S L A+ A K + V + G
Sbjct: 375 AAITYSLWYARNQAVHEDILIPETHIIQRAASSLSAYLKANAKVSETGSSHSSVVSTNHG 434
Query: 226 -----AAVWSTPPAGYLKCNTDAAPPGVNSQIGAGWS*G 259
+ W P ++K NTDA N Q+ W G
Sbjct: 435 NHASSSEKWKRPDHSFVKVNTDA-----NLQVQGRWGLG 468
>IMGA|Medtr8g024620.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 4663551-4665766 E
EGN_Mt090430 20090702
Length = 587
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 105/262 (40%), Gaps = 19/262 (7%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
W +++ F + I++ PL D W EK G Y+V+SAYR+ + ++ +
Sbjct: 214 WNQDVIHCYFDNSTAQQILKTPLFRQVEEDQLIWKAEKNGHYSVRSAYRICMEEIGDNSY 273
Query: 62 PSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLH 121
FW W LK KVKNLIWR+ CLP + L+ ++V+ +C +C E LH
Sbjct: 274 LHRPGFWNGIWKLKASPKVKNLIWRICLGCLPTRAKLLDKRVNCTSMCSMCDGNYEDDLH 333
Query: 122 VFVDCGYACECLECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRH 181
V DC A + S + D + + + +Q ++W++W+
Sbjct: 334 VLFDCQRARSIWRDSHLSNDIYVAMQTNNTAADIVSALLQNLPHTKIQLFVTLVWSLWKS 393
Query: 182 RNEVLWSNTRTPAPQLLNSSFSYLLAWQSA-------------------QIKTACPVPVV 222
RN +W N + ++ + L W++A + V
Sbjct: 394 RNIQVWQNMPESSQSIVERAHQLLHGWKAANNCRNRFDRSVIGAETHTVNTMSGSSCTQV 453
Query: 223 DQGAAVWSTPPAGYLKCNTDAA 244
Q P G KCN DA+
Sbjct: 454 QQDQFRCQKPTRGRFKCNVDAS 475
>IMGA|Medtr4g129960.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
31059249-31058149 H EGN_Mt090430 20090702
Length = 344
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 105/260 (40%), Gaps = 44/260 (16%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
W V+ + +L +++ PL S D W E+ G Y+VK+ YR+ D+
Sbjct: 57 WDVDKIFDLLSFESANSVLKTPLFPSVQDDQVIWQEEQNGVYSVKTGYRIDARDVVPASQ 116
Query: 62 PSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLH 121
++ W + W + K +NL+WR+ C+P + L+ R+V LCP CGL E H
Sbjct: 117 YQVRGDWNKLWKVCSPPKARNLLWRICPGCIPTRVKLVHRQVPCAYLCPWCGLEAETDWH 176
Query: 122 VFVDCGYACECLECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRH 181
F+ C A E S L LH + N+ V ++LW IW
Sbjct: 177 AFIGCTIAKESWSFAGLSEL----LHEL------VFNICSCESANAVGRGAVLLWQIWSA 226
Query: 182 RNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIKTACPVPVVDQGAAV--WS--TPPAGY- 236
RN+V+W++T C + G AV W P GY
Sbjct: 227 RNDVVWNDT--------------------------CETSITIGGLAVIGWQQWNQPLGYR 260
Query: 237 -LKCNTDAA--PPGVNSQIG 253
LKCN D A GV IG
Sbjct: 261 WLKCNVDTAVHKTGVAYSIG 280
>IMGA|Medtr5g090160.1 Haem peroxidase, plant/fungal/bacterial
chr05_pseudomolecule_IMGAG_V3 35125187-35123779 E
EGN_Mt090430 20090702
Length = 360
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 117/256 (45%), Gaps = 17/256 (6%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLV-----PDM 56
W +L+++ FI + I Q+PL + D W + G Y+VK+ Y+ + D
Sbjct: 13 WNKKLIEDTFIPFEGIQIQQLPLTDKENQDSLMWMFSETGVYSVKTGYQAIQCWKNNRDQ 72
Query: 57 TNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAE 116
+ +++ W++ WGL+ + + K LIW++ + LPV++ LI R + +LCP C
Sbjct: 73 GPSSEEIMKTVWKKVWGLQTIPRHKVLIWKIINRALPVRSELINRGIRCSLLCPRCDSTI 132
Query: 117 EIPLHVFVDCGYACECLECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLW 176
E H+F++C + E + F DWL + L D + + +L+
Sbjct: 133 ETINHLFLNCEHTRR--EWFGSQLGINFQNENLTDFIDWLISFILNNDKSTIITMAALLY 190
Query: 177 TIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIKTACPVPVVDQGAAV-------- 228
++W RN++++ N ++ + + +L++++ Q + +D ++
Sbjct: 191 SVWHARNQLVFKNKDIHGEVVIQRAKNSILSYKNVQQADLDHLNNIDSTRSMHRAQVPTK 250
Query: 229 --WSTPPAGYLKCNTD 242
W P +K N+D
Sbjct: 251 VKWVRPEKDVIKVNSD 266
>IMGA|Medtr3g138250.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
35324945-35323011 H EGN_Mt090430 20090702
Length = 613
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 109/267 (40%), Gaps = 37/267 (13%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLV-----PDM 56
W ELL F+ D + I QIP+ D W EK G+YTVKS Y +
Sbjct: 213 WNSELLNNQFLGIDTEAIEQIPIIDIFHRDTLMWMFEKTGSYTVKSGYTAIQIWKNGSQN 272
Query: 57 TNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAE 116
+ + + W++ W L + + K ++WR+ +N +P+++ L +R V LCP C
Sbjct: 273 SPSSSSENTKLWKKIWNLHTIPRHKTILWRILNNSIPLRSELGKRGVLCSPLCPRCETKI 332
Query: 117 EIPLHVFVDC----------GYACECLECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVE 166
E H+F+ C + L+ +PS DWL + L + +
Sbjct: 333 ETTDHIFMHCPNISKIWFRSNLNLKTLDLPIPS------------FRDWLMHSILTLKED 380
Query: 167 DVQALCIVLWTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIK----------TA 216
+ + + + IW+ RN+ ++ + P ++ S + + AQ+ +
Sbjct: 381 TIIQIASITYNIWQARNQSIYEHMYKPEADIIQRSDRCVSDFLQAQLSDTVDNLNHDISY 440
Query: 217 CPVPVVDQGAAVWSTPPAGYLKCNTDA 243
P W PP G K N+DA
Sbjct: 441 SNAPHQSVARRQWQPPPLGIFKGNSDA 467
>IMGA|Medtr8g037100.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 7957038-7958530 H
EGN_Mt090430 20090702
Length = 410
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
W V L +F E+ + I+ PL S D W E Y+V+SAYRL + ++ +T
Sbjct: 110 WDVPFLHSIFSEQIVEHIVATPLYSSVREDQLIWKKENNEEYSVRSAYRLCLNELLDTSH 169
Query: 62 PSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLH 121
++ W W LK+ +VKNLIWR+ N LP + L + V+ +C +C L EE +H
Sbjct: 170 FKVEGAWDLVWKLKVPPRVKNLIWRICRNFLPTRKRLRDKGVNCTTVCALCNLEEEGSMH 229
Query: 122 VFVDCG 127
+ C
Sbjct: 230 LLFKCA 235
>IMGA|Medtr8g133770.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 31993480-31994567 H
EGN_Mt090430 20090702
Length = 318
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 97/233 (41%), Gaps = 21/233 (9%)
Query: 17 KLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKI 76
+ I+ PL +D W E+ G YTVK+ Y+L + ++ +T ++ R W +
Sbjct: 25 QAILDRPLFAEVHNDRIAWMMERSGRYTVKTDYKLAMMELLHTDQFHVEGECHRIWKVNS 84
Query: 77 LSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACECLECT 136
K NL+WR+ C+ ++ L R V +VLCP C E H FV C E
Sbjct: 85 PHKAHNLLWRICRGCVLMRLRLQSRHVLCEVLCPWCDTTVEDDWHAFVGCTVVRESWYWA 144
Query: 137 VPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSNTRTPAPQ 196
S + LQ+ + V + ++LW IW R +V+W++ +
Sbjct: 145 GLSTV--------------LQSRVGTANT--VGRVALLLWQIWAARKDVIWNDAHHTSTS 188
Query: 197 LLNSSFSYLLAWQSAQIKTACPVPVVDQGA-----AVWSTPPAGYLKCNTDAA 244
+ ++ WQ + + + Q +VW P +L CN DAA
Sbjct: 189 IGRTTLDAWQQWQEVHKQPSSSIAQHGQNRVQANNSVWEKPRETWLNCNVDAA 241
>IMGA|Medtr8g093640.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 20655028-20657384 H
EGN_Mt090430 20090702
Length = 376
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 30/238 (12%)
Query: 42 TYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQR 101
T VKSAYRL V ++ + W W LK+ KV+NLIWR+ CL + L +
Sbjct: 27 TGLVKSAYRLCVEELIDASHLRRPGNWSSIWKLKVPPKVRNLIWRICRLCLSTRIRLHDK 86
Query: 102 KVDVDVLCPVCGLAEEIPLHVFVDCGYACECLECTVPSVLAVF--DLHAFQRIEDW-LQN 158
V C C + E H+F C +A + L+ D+ A +D +
Sbjct: 87 GVQCPTQCVSCESSHEDMAHLFFACSFAIQVWR------LSGLWSDVSAANSNDDSNIGT 140
Query: 159 VFLGMDVEDVQALCI---VLWTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIKT 215
VF +D+ + + +W++W+HRN +W + A +++ + + WQ A KT
Sbjct: 141 VFALLDMLTTKQRVVFAATVWSLWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKT 200
Query: 216 ------------------ACPVPVVDQGAAVWSTPPAGYLKCNTDAAPPGVNSQIGAG 255
+ V D G +W P +G KCN DA ++ G G
Sbjct: 201 PAESRAATTAPPTQLLSNSAEVNSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIG 258
>IMGA|Medtr7g021160.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V3
5113686-5112454 H EGN_Mt090430 20090702
Length = 410
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 111/266 (41%), Gaps = 34/266 (12%)
Query: 6 LLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLL----VPDMTNTP- 60
+++ FI D I QIP+ +++ D+ W E G Y+VKS Y+ + + NT
Sbjct: 1 MIRSQFISLDQNHIEQIPIINTTNQDELMWMYELNGIYSVKSGYQAIRSWQIQQKHNTTP 60
Query: 61 -APSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIP 119
S + W++ W L + + K ++WR+ N LPV++ L +R + +LCP C E
Sbjct: 61 NCSSETTVWKKLWKLHTIPRHKVILWRILHNSLPVRSELNKRGIHCSILCPRCNSKMETI 120
Query: 120 LHVFVDCGYACECLECTVPSVLAV-FDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTI 178
H F+ C L S L + F +WL + L D + + ++++I
Sbjct: 121 THTFMTCP---NILRTWFGSSLTIKFPDQPNPNFVNWLFDFILHEDEQIIIQTAAIIYSI 177
Query: 179 WRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSA---------------------QIKTAC 217
W RN ++ N P ++ + + +++A TAC
Sbjct: 178 WFSRNLSIFENKTLPEEDIILRAEHSIQEYKAATKTDPGQADSMTRSSNASTTHNNSTAC 237
Query: 218 PVPVVDQGAAVWSTPPAGYLKCNTDA 243
+ W P G++K N DA
Sbjct: 238 ---TTHNNSTKWRRPETGFVKANGDA 260
>IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3 86385-88912
E EGN_Mt090430 20090702
Length = 566
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%)
Query: 1 LWKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTP 60
+W V+ ++ LF + + I+ PL +D W E G YT+ + Y++ + ++ +T
Sbjct: 380 VWDVDKIESLFPDDMVQAILDTPLFAEVHNDRITWMVECNGRYTINTGYKIAMMELLHTD 439
Query: 61 APSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPL 120
++ W+R W + K +NL+WR+ C+P + L R V +V+CP C E
Sbjct: 440 RFHVEEEWKRIWKVNSHHKARNLLWRICRGCVPTRLRLQSRHVQCEVICPSCDTVVEDDW 499
Query: 121 HVFVDCGYACE 131
H FV C ACE
Sbjct: 500 HAFVGCTVACE 510
>IMGA|AC225507_9.1 Polynucleotidyl transferase, Ribonuclease H fold
AC225507.11 35556-36938 E EGN_Mt090430 20090702
Length = 358
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 101/247 (40%), Gaps = 43/247 (17%)
Query: 33 WFWDNEKRGTYTVKSAYRLLVPDMTNT-PAPSLQS----FWQRFWGLKILSKVKNLIWRL 87
W + N G YTVKS Y L N+ P PS S W++ W L + + K ++WR+
Sbjct: 2 WMYSNN--GNYTVKSGYEALQSWKNNSNPGPSTSSQNNNIWKKLWALHTIPRHKMIVWRI 59
Query: 88 GSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACECLECTVPSVLAVFDLH 147
N LPV+T L +R V+ LCP C E H+F+ C + S+ F +
Sbjct: 60 LHNTLPVRTELNKRGVNCPPLCPRCYSNLETTNHIFMSCERTQRVWFGSQLSIR--FPDN 117
Query: 148 AFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLA 207
+ DWL + E + + + ++IW RN+ ++ N ++LA
Sbjct: 118 STINFSDWLFDAISNQTEEIIIKISAITYSIWHARNKAIFEN--------------HILA 163
Query: 208 WQSAQIKTACPVPVVDQGAAV---------------WSTPPAGYLKCNTDAAPPGVNSQI 252
++ A IK P V+ +A W P LK N DA N Q+
Sbjct: 164 YEQATIKPQNPNIVLSSLSATSNTNTTRRRSNVRSRWQKPLNNILKANCDA-----NLQV 218
Query: 253 GAGWS*G 259
W G
Sbjct: 219 QGRWGLG 225
>IMGA|Medtr5g073410.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
26368918-26367637 H EGN_Mt090430 20090702
Length = 409
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 109/274 (39%), Gaps = 38/274 (13%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
W ++ F + II+ P+ D W EK G Y+VK
Sbjct: 57 WNYNMVNYYFDYDTVQEIIRTPIFHQVEEDALIWKAEKNGHYSVKR-------------- 102
Query: 62 PSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLH 121
Q+ F K+ KV N +WR+ +CLP + L+ + V+ LC +C E H
Sbjct: 103 ---QAVGIAFGDSKVPLKVNNFLWRVCRDCLPTQARLLDKGVNCTYLCGLCEECYEDTTH 159
Query: 122 VFVDCGYACEC-LECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWR 180
V DC A L C++ ++ L+ E L + + E + + LW++W+
Sbjct: 160 VLFDCPKARNVWLNCSMVDKVSSVMLNHNTAAEIILA-LLKELTKEKFEQFAMNLWSLWK 218
Query: 181 HRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIK----TACPVPVVDQ--------GAAV 228
RN +W N + + L+ W+ A ++ +A VV Q GA+
Sbjct: 219 SRNLRIWQNISETCQAISARAQQMLVEWREANMRKQKCSAAGHMVVQQADVNMHYVGASS 278
Query: 229 -------WSTPPAGYLKCNTDAAPPGVNSQIGAG 255
W+ P G LKCN DAA + +G G
Sbjct: 279 LLSSHIKWTKPQQGKLKCNIDAAFSEDLNHVGFG 312
>IMGA|Medtr1g147120.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr01_pseudomolecule_IMGAG_V3
32701852-32701244 H EGN_Mt090430 20090702
Length = 202
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 14 RDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWG 73
+D I ++PL + SD W+ G+YT+KSAY++ V + W+ W
Sbjct: 4 QDTSDICRLPLHSRTHSDTIIWNASPNGSYTIKSAYKMCVSISDQRSNYHVSGDWKLIWS 63
Query: 74 LKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACEC 132
L + K+K+ WRL CLP ++ L V C VC E +H+F+ C +A +C
Sbjct: 64 LCVAPKIKHFCWRLLRGCLPTRSNLQSCGVHCQSTCVVCNRDLEDEMHMFMHCKFATDC 122
>IMGA|Medtr8g006140.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr08_pseudomolecule_IMGAG_V3
577887-575821 H EGN_Mt090430 20090702
Length = 278
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 102/243 (41%), Gaps = 52/243 (21%)
Query: 17 KLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKI 76
+ I+ PL + +D W E+ G YTVK+ Y+L + ++ +T L+
Sbjct: 3 QAILDTPLFVEVQNDRIVWMMERNGRYTVKTDYKLAMMELLHTDRFHLK----------- 51
Query: 77 LSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACECLECT 136
+N I G C+P + LL R V +V+CP C A E H FV C
Sbjct: 52 ----ENDIGS-GRGCVPTRLLLRSRHVQCEVICPWCDTAVEDDWHAFVGC---------- 96
Query: 137 VPSVLA--VFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSNTRTPA 194
+ S LA VFD+ + D+ AL + W IW RN+++W++ +
Sbjct: 97 MVSSLADFVFDICCSE-----------SRDISGRVAL--LHWKIWVARNDIIWNDAHHTS 143
Query: 195 PQLLNSSFSYLLAWQSAQIKTACPVPVVDQ--------GAAVWSTPPAGYLKCNTDAAPP 246
+ ++ L AWQ Q P PVV Q ++W P +LKCN DA
Sbjct: 144 TSIGRTA---LDAWQQWQEVHKHPSPVVVQHRQNRVQGNISIWEKPSEMWLKCNVDATFH 200
Query: 247 GVN 249
N
Sbjct: 201 DHN 203
>IMGA|Medtr8g005870.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr08_pseudomolecule_IMGAG_V3
490235-488169 H EGN_Mt090430 20090702
Length = 278
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 102/243 (41%), Gaps = 52/243 (21%)
Query: 17 KLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKI 76
+ I+ PL + +D W E+ G YTVK+ Y+L + ++ +T L+
Sbjct: 3 QAILDTPLFVEVQNDRIVWMMERNGRYTVKTDYKLAMMELLHTDRFHLK----------- 51
Query: 77 LSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACECLECT 136
+N I G C+P + LL R V +V+CP C A E H FV C
Sbjct: 52 ----ENDIGS-GRGCVPTRLLLRSRHVQCEVICPWCDTAVEDDWHAFVGC---------- 96
Query: 137 VPSVLA--VFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSNTRTPA 194
+ S LA VFD+ + D+ AL + W IW RN+++W++ +
Sbjct: 97 MVSSLADFVFDICCSE-----------SRDISGRVAL--LHWKIWVARNDIIWNDAHHTS 143
Query: 195 PQLLNSSFSYLLAWQSAQIKTACPVPVVDQ--------GAAVWSTPPAGYLKCNTDAAPP 246
+ ++ L AWQ Q P PVV Q ++W P +LKCN DA
Sbjct: 144 TSIGRTA---LDAWQQWQEVHKHPSPVVVQHRQNRVQGNISIWEKPSEMWLKCNVDATFH 200
Query: 247 GVN 249
N
Sbjct: 201 DHN 203
>IMGA|Medtr6g031250.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr06_pseudomolecule_IMGAG_V3
7154274-7154825 H EGN_Mt090430 20090702
Length = 183
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 3/174 (1%)
Query: 84 IWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACEC-LECTVPSVLA 142
+W LG +CLP+ L + V+ C +C + H+F+ C + C + + S+L
Sbjct: 1 MWHLGRDCLPIGQRLNCKGVECTSNCVICQSYTKYNWHLFLVCADSITCWRKVNIWSLLE 60
Query: 143 VFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSNTRTPAPQLLNSSF 202
+ + D ++ + VE + + + W+IW+ RN LW N Q+L +
Sbjct: 61 EL-MDGAESFGDVFTRMWQRLLVEQLMSFSMTSWSIWKKRNLKLWKNKIESLDQILQRAQ 119
Query: 203 SYLLAWQ-SAQIKTACPVPVVDQGAAVWSTPPAGYLKCNTDAAPPGVNSQIGAG 255
L AW+ + +++ + + A VW P AG LKCN DA V+ I G
Sbjct: 120 VVLNAWEWARRVQQSHTMTQQQTHATVWQPPRAGLLKCNVDATIFTVDRIISMG 173
>IMGA|Medtr3g124260.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 31444078-31442691 H
EGN_Mt090430 20090702
Length = 404
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 98/255 (38%), Gaps = 41/255 (16%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
W L+ +F + I+ PL L + D W EK G Y+V+SAYR+ V ++ +
Sbjct: 57 WNEPLVICIFEAGTAQQILNTPLFLQVNEDKLVWKPEKNGQYSVRSAYRVCVEEIADMSH 116
Query: 62 PSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDV-DVLCPVCGLAEEIPL 120
FW W LK+ KVKN++WR+ CLP + L I R + V+ P+ ++ P
Sbjct: 117 LHTNGFWGGIWKLKVPPKVKNMLWRVCRECLPTRVLGIWRSTGLWQVIEPLLHRFDDAPD 176
Query: 121 HVFVDCGYACECLECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWR 180
+F Y E V A +EDW +N V+ Q +
Sbjct: 177 IIF----YLLEHGSAQVTESNGSIIERAKHLLEDW-RNANKKQQVQASQQGNTTV----- 226
Query: 181 HRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIKTACPVPVVDQGAAVWSTPPAGYLKCN 240
V+ NT PQ V V W P G LKCN
Sbjct: 227 ----VMLPNT----PQ----------------------VTVGSNEETRWKKPMRGRLKCN 256
Query: 241 TDAAPPGVNSQIGAG 255
A+ +++G G
Sbjct: 257 VVASFSSSTNKVGVG 271
>IMGA|Medtr7g107300.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
25061037-25062481 E EGN_Mt090430 20090702
Length = 407
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 1 LWKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLL----VPDM 56
LW +L++ FI + I IPL +++ D W + G Y+VKS Y L +
Sbjct: 251 LWNKVILEDQFISINIDQISHIPLVNTTNPDSLMWMHNPTGIYSVKSGYNTLRTWQTQQI 310
Query: 57 TNTPAPSLQSF-WQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLA 115
NT S ++ W++ W L + + K L+WR+ ++ LPV++ L +R + LCP C
Sbjct: 311 NNTSTSSDETLIWKKIWSLHTIPRHKVLLWRILNDSLPVRSSLRKRGIQCYPLCPRCHSK 370
Query: 116 EEIPLHVFVDC 126
E H+F+ C
Sbjct: 371 TETITHLFMSC 381
>IMGA|Medtr1g122150.1 contains similarity to reverse trancriptase,
related, putative chr01_pseudomolecule_IMGAG_V3
26788772-26788104 H EGN_Mt090430 20090702
Length = 222
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVP----DMT 57
W E+L LF+ D I QIP+ +++ D++ W +E G YTVKS Y+ + +
Sbjct: 108 WDTEILNNLFLPIDKDHIEQIPIINTTNIDEYMWMHEPTGVYTVKSGYKAIKEWQDQQFS 167
Query: 58 NTPAPSLQS-FWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCP 110
+T + S + W++ W + + + K L+WR+ N LPV++ L R V +LCP
Sbjct: 168 STASSSCDTQVWKKLWAIHTIPRHKVLLWRILQNSLPVRSELSNRGVPCSILCP 221
>IMGA|Medtr4g042860.1 contains similarity to reverse trancriptase,
related, related chr04_pseudomolecule_IMGAG_V3
10317892-10316821 H EGN_Mt090430 20090702
Length = 341
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
W L+ E F+ + I+QIP+ S D + W K +T R + +N
Sbjct: 101 WNAHLVNEFFLPFKAQQILQIPVFPSQQQDCFIWAVNKNDEFTEFLKERRERLN-SNYSH 159
Query: 62 PSLQS-FWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPL 120
SLQ+ W + W +K + + +LIW + N LPV++ L R V LC +C +E
Sbjct: 160 SSLQNGVWNKLWRVKTIPRHTHLIWCILHNWLPVRSALFNRGVQCSPLCCLCDQQQESIN 219
Query: 121 HVFVDCGYACECLECTVPSVLAVFDLHAFQRI--EDWLQNVFL---GMDVEDVQALCIVL 175
H+F++CG++ + S+ +FD++ ++I WL++V ++ + A+C L
Sbjct: 220 HLFMECGWSKAVWFASPLSL--IFDINGGEQILFSIWLEHVVAYENNCTIQLIFAICYGL 277
Query: 176 WTIWRHR 182
WT+ R
Sbjct: 278 WTLLNKR 284
>IMGA|AC232874_27.1 hypothetical protein AC232874.1 84446-85505 H
EGN_Mt090430 20090702
Length = 336
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 21/250 (8%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
WK+++L F+ D I QI + ++ D+ W E +G + + +N
Sbjct: 13 WKIDVLINNFLAIDIPAIEQISIINTNHKDELMWMFEPKGGLHCQE----WLHSHSNLEI 68
Query: 62 PSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLH 121
+ + +F + KNL+WR+ +N LP+++ L +R V L P C + EI H
Sbjct: 69 QNKYISYNQF-------QHKNLLWRILTNSLPIRSELEKRGVKCSPLYPRCNIKVEILEH 121
Query: 122 VFVDCGYACECLECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRH 181
VF+ C + + + L + + + DW+ + L + E + +L+ IW+
Sbjct: 122 VFMTCQHISRTWFGSALN-LKILE-QPISNLSDWIAHSILNLKEEVNIQIASILYNIWQA 179
Query: 182 RNEVLWSNTRTPAPQLLNSS---FSYLLAWQS---AQIKTACPVPVVDQGAA--VWSTPP 233
RN+ ++ P ++ S S LA + QI +P Q W P
Sbjct: 180 RNQAIFDEKFIPEETIITRSSCCISEFLAANNPDPTQIDLIPNLPSKQQRKTHHKWIPPA 239
Query: 234 AGYLKCNTDA 243
YLK N+DA
Sbjct: 240 PNYLKANSDA 249
>IMGA|Medtr3g147880.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
38411077-38409788 H EGN_Mt090430 20090702
Length = 359
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 91/207 (43%), Gaps = 12/207 (5%)
Query: 40 RGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLI 99
+G Y+ KSAY L+ + + W LK+ S ++ +W++ + LP K++L+
Sbjct: 13 KGIYSTKSAYHTLLNRFHDVEN---NHNFNWIWKLKVSSNIQFFMWQICLSSLPTKSILV 69
Query: 100 QRKVDVDVLCPVCGLAEEIPLHVFVDCGYACEC-LECTVPSVLAVFDLHAFQRIEDWLQN 158
R + CP+C +EE +H + C A E +C S++ D + + W++N
Sbjct: 70 SRHIAPSATCPICNASEEAMIHCLLTCTIAKEVWKKCFNTSLIPPADDSS---LGSWVEN 126
Query: 159 VFLGMDVEDVQALCIVLWTIWRHRNEVLWSNTRTPAPQLLNSSFS-YLLAWQSAQIKTAC 217
F + + +++W W RN+ ++ +TP ++ + Y+ ++ I C
Sbjct: 127 CFKNHGIFPL----LIMWKCWCARNKFIFDGIKTPFFIIVAECNALYMHTVKAFGIGGTC 182
Query: 218 PVPVVDQGAAVWSTPPAGYLKCNTDAA 244
W P G++ N D +
Sbjct: 183 ARGSEVAREVCWKRPDTGWIALNVDGS 209
>IMGA|Medtr5g040610.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
17349249-17348078 H EGN_Mt090430 20090702
Length = 340
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 47 SAYRLLVPDMTNT---PAPSLQ--SFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQR 101
S Y+ + TN+ P S Q + W++ W LK + + KN +WR+ +N LP+++ L +R
Sbjct: 9 SGYQAIASWKTNSNQAPTTSNQDTTIWKKLWALKTIPRHKNFLWRVINNSLPLRSELGKR 68
Query: 102 KVDVDVLCPVCGLAEEIPLHVFVDCGYACECLECTVPSVLAV-FDLHAFQRIEDWLQNVF 160
+ LCP C E H F+ C Y S L + D DW+
Sbjct: 69 GIQCSPLCPHCNSKIEDINHAFMTCSYITRVW---FGSQLNINIDKSPITNFSDWISYAI 125
Query: 161 LGMDVEDVQALCIVLWTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAW------QSAQIK 214
+ + + + + IW RN+ ++ + R P +++ + + + + Q+A+
Sbjct: 126 EHNEPDITIQIADLTYHIWFDRNQRVFEDKRIPEEDIIHRAANSIHDFHEAHLPQNAKAT 185
Query: 215 TACPVPVVDQGAAV--WSTPPAGYLKCNTDAAPPGVNSQIGAGWS*G 259
AC + V W P +K N+DA N Q+ W G
Sbjct: 186 LACYSGYSSKPKRVTTWKKPTDNLVKMNSDA-----NLQVDGWWGLG 227
>IMGA|Medtr4g084370.1 contains similarity to reverse trancriptase,
related, related chr04_pseudomolecule_IMGAG_V3
17724162-17724986 H EGN_Mt090430 20090702
Length = 274
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
W L+ +LF+ + I QIPL ++ DD W + G+Y+VK Y +
Sbjct: 89 WNTPLIHKLFLPFETDQIHQIPLINTNEDDDLVWAHTNNGSYSVKYGYHFIKNREEQAQG 148
Query: 62 PSLQS------FWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLA 115
S + W I LIWR+ +N LPVK L+Q + D LCP CG
Sbjct: 149 QPGNSSTCCDPISKNLWNQTIPQNKIQLIWRIMNNGLPVKRNLMQCGIRCDPLCPGCGNH 208
Query: 116 EEIPLHVFVDCGY 128
E H F+ C +
Sbjct: 209 IESISHTFMQCSW 221
>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
transcriptase); Hemopexin; Polynucleotidyl transferase,
Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
27457173-27452820 H EGN_Mt090430 20090702
Length = 1147
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
W L++ F RD I++IPL +D W +K+G Y+VK+AYR+ V + N
Sbjct: 768 WNEPLIRNNFNLRDVDEILKIPLLHCEQNDAIIWRFDKKGVYSVKNAYRVCVDVLINRDE 827
Query: 62 PSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLL 98
++ + W L I KVK+ +WRLG +CLP + L
Sbjct: 828 WKVEGDRNKLWSLPIPPKVKHFMWRLGRDCLPNRQRL 864
>IMGA|Medtr2g111150.1 probable reverse transcriptase At2g02650 -,
related, putative chr02_pseudomolecule_IMGAG_V3
26303076-26303699 H EGN_Mt090430 20090702
Length = 188
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 19/198 (9%)
Query: 17 KLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKI 76
+ I+ PL +D W E+ G YTVK+ Y+L + ++ +T ++
Sbjct: 3 QAILDTPLFAEVQNDRITWMMERNGRYTVKTGYKLAMMELLHTDWFHVEG---------- 52
Query: 77 LSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACECLECT 136
+ C+P + L R V +V+CP C A E H FV C A E
Sbjct: 53 ---------EICKGCVPTRLRLRSRYVQCEVICPWCDTAVEDDWHAFVGCTIARESWYWA 103
Query: 137 VPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSNTRTPAPQ 196
S + + R+ D++ ++ + + ++LW IW RN+V+W++ +
Sbjct: 104 GLSTVLQTRVGTESRLLDFVFDICCSESRDTAGRVALLLWQIWAARNDVIWNDAHHTSKG 163
Query: 197 LLNSSFSYLLAWQSAQIK 214
+ ++ W K
Sbjct: 164 IGRTTLDAWQQWHGTDQK 181
>IMGA|Medtr3g019330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
3889810-3888042 H EGN_Mt090430 20090702
Length = 489
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%)
Query: 3 KVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAP 62
V L++++F I+ PL D W E+ G YTV+SAYRL V + +
Sbjct: 152 NVPLVRQVFSNDIVDAILNTPLYDQVHQDRLIWKAERNGCYTVRSAYRLCVEKLMDVSYL 211
Query: 63 SLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVC 112
W W LK+ KVKNL+ R+ CLP + L + V C C
Sbjct: 212 HRPGSWNNIWRLKVPPKVKNLLVRMCRGCLPTRARLQDKGVSCPTNCGSC 261
>IMGA|Medtr2g095830.1 Lipocalin chr02_pseudomolecule_IMGAG_V3
22005738-22006807 E EGN_Mt090430 20090702
Length = 168
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
W ++ +F + D K I + L D W + G YTV+SAYR + + +
Sbjct: 42 WNWGMIAGIFNDHDRKAISNLALLNRDGEDRIIWKFNRYGNYTVRSAYRYAMETLVDNVE 101
Query: 62 PSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLH 121
+ W + W LKI ++K +WR LP + L + V CP C E H
Sbjct: 102 YRVSGEWLKMWSLKIPQRIKVFLWRAVRGALPTRMRLQDKVVPCTDCCPFCETNYENNWH 161
Query: 122 VFV 124
VF+
Sbjct: 162 VFM 164
>IMGA|Medtr1g089830.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr01_pseudomolecule_IMGAG_V3
18011505-18012272 H EGN_Mt090430 20090702
Length = 179
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%)
Query: 34 FWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLP 93
W+ EK G Y+V+SAYR+ V + + + W LK+ KVKN +WR+ C P
Sbjct: 43 IWNTEKNGNYSVRSAYRICVTKIADNTHLHVSVDGNLSWKLKVPPKVKNFVWRVRRGCFP 102
Query: 94 VKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDC 126
+ L V + C C E +HV V+C
Sbjct: 103 TRARLSSGGVAYPIDCVTCDSNYEDSIHVLVEC 135
>IMGA|Medtr5g083870.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
31873812-31875697 H EGN_Mt090430 20090702
Length = 485
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 43/245 (17%)
Query: 9 ELFIERDW-KLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSF 67
+L ++W ++IQ L S D W E G Y+V+S Y ++V ++ PS
Sbjct: 184 QLLKTKEWAHVVIQTSLFPSVQEDKVVWQEESNGLYSVRSGYHIVVREV----VPSTHY- 238
Query: 68 WQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCG 127
C+P + L QR V +C C EE H FV+C
Sbjct: 239 ---------------------RGCIPTRVNLNQRHVSCTNICLWCDYEEETYWHAFVECE 277
Query: 128 YACECLECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLW 187
A E T SV+ + ++ FQ + + + + + + ++LW +W N V+W
Sbjct: 278 VARESWFSTGLSVVLLPRVNLFQSLSELIFYICCTESADAGGCIAVMLWQLWAAHNNVVW 337
Query: 188 SNTRTPAPQLLNSSFSYLLAWQSAQI---------KTACPVPVVDQGAAVWSTPPAGYLK 238
+++R ++ + S WQ ++ P+PV W ++K
Sbjct: 338 NSSRDTPLKIGRLALS---NWQQRKLAQEVSSSGRHVNTPLPV----QVRWEKLTHRWMK 390
Query: 239 CNTDA 243
CN ++
Sbjct: 391 CNVES 395
>IMGA|Medtr1g016440.1 probable reverse transcriptase At2g02650 -,
related, related chr01_pseudomolecule_IMGAG_V3
3173721-3173118 H EGN_Mt090430 20090702
Length = 143
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 37 NEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKT 96
+ G Y+V+S YR+ ++ ++ +Q W W ++ K +NL+WR+ C+P ++
Sbjct: 23 QDSNGLYSVRSGYRIAAREVASSTHYYIQGEWNAIWKVQAPHKARNLLWRICWGCIPTRS 82
Query: 97 LLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACE 131
LIQR V C C EE H FV A E
Sbjct: 83 KLIQRHVPCTNRCTWCDGEEETNWHAFVGYDVARE 117
>IMGA|Medtr1g016370.1 probable reverse transcriptase At2g02650 -,
related, related chr01_pseudomolecule_IMGAG_V3
3148938-3149541 H EGN_Mt090430 20090702
Length = 143
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 37 NEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKT 96
+ G Y+V+S YR+ ++ ++ +Q W W ++ K +NL+WR+ C+P ++
Sbjct: 23 QDSNGLYSVRSGYRIAAREVASSTHYYIQGEWNAIWKVQAPHKARNLLWRICWGCIPTRS 82
Query: 97 LLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACE 131
LIQR V C C EE H FV A E
Sbjct: 83 KLIQRHVPCTNRCTWCDGEEETNWHAFVGYDVARE 117
>IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse
transcriptase); Histone H2B; Histone-fold;
Polynucleotidyl transferase, Ribonuclease H fold
chr01_pseudomolecule_IMGAG_V3 17931605-17934389 E
EGN_Mt090430 20090702
Length = 802
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 15/186 (8%)
Query: 70 RFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYA 129
+ W L + + + L+WR+ + LPV+ L +R ++ +LCP C E H+F++C
Sbjct: 437 KIWSLDTIPRHRVLLWRIINKALPVREELHKRGINCSLLCPRCEEGIETIDHLFLNCD-- 494
Query: 130 CECLECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSN 189
C E ++ F + +WL + D + L +L++IW RN+ ++ +
Sbjct: 495 CSRRELFGSNLGINFQSNTTADFVNWLISFIYTNDKPPIINLAALLYSIWHARNQKVFED 554
Query: 190 TRTPAPQLLNSSFSYLLAWQSA------------QIKTACPVPVVDQGAAVWSTPPAGYL 237
P +++ + + + +++ A QI A + W P G +
Sbjct: 555 KTIPEDVVIHRACNSISSFRKARSGPPDHHHRYNQIHPALRSTRAPEHTK-WVKPQQGVI 613
Query: 238 KCNTDA 243
K NTDA
Sbjct: 614 KLNTDA 619
>IMGA|Medtr3g103760.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
25622719-25621333 H EGN_Mt090430 20090702
Length = 441
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
Query: 19 IIQIPLGLSSSSDDWF-WDNEKRGTYTVKSAYRLLVPD----MTNTPAPSLQSFWQRFWG 73
I I ++S +D F W N K GTYT KS Y L+ + + P PS W+
Sbjct: 114 INNIHFKFNASVEDTFIWHNNKNGTYTPKSGYSWLLSRKELVIISNPPPSCSWIWK---- 169
Query: 74 LKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACECL 133
L + K+K W N +P ++L R + +C CGL +E LH DC ++
Sbjct: 170 LHMPEKIKLFFWLACHNSVPTLSMLNHRNIAPSPVCSRCGLHDETFLHCVRDCAHSKSIW 229
Query: 134 ECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSN 189
+ D + +WL+N +G A +W WR+RN + N
Sbjct: 230 QRI---GFIHNDFFSTSVTHEWLKNNSVGHLSFTFAA---TIWWAWRNRNMMCLEN 279
>IMGA|AC233662_12.1 Lipocalin AC233662.1 48072-47128 H EGN_Mt090430
20090702
Length = 275
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 85/226 (37%), Gaps = 33/226 (14%)
Query: 17 KLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKI 76
K I + L D W + YTV+SAYR + + + + W + W LKI
Sbjct: 20 KAISNLALLNRDGKDRLIWKFNRHEIYTVRSAYRYAMKTLVDNVEYRILGEWLKMWSLKI 79
Query: 77 LSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACECLECT 136
+VK +WR P + + + V CP C E HVF+ CE ++ T
Sbjct: 80 PQRVKVFLWRAVRGVFPTRMRMQDKGVPCTDCCPFCETNYENDWHVFM----GCEEVK-T 134
Query: 137 VPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSNTRTPAPQ 196
+ ++DL I + + + D D++ + I A Q
Sbjct: 135 IWRTTGLWDL-----IAETVADAASFADYGDLKPVSI--------------------AIQ 169
Query: 197 LLNSSFSYLLAWQSAQIKTACPVPVVDQGAAVWSTPPAGYLKCNTD 242
L S L WQ A+ TA P Q W P G LKCN D
Sbjct: 170 L---SREALFQWQIARQTTAAPHQTQHQQTIQWQPPAQGVLKCNVD 212
>IMGA|AC233657_3.1 Lipocalin AC233657.1 16055-16999 H EGN_Mt090430
20090702
Length = 275
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 85/226 (37%), Gaps = 33/226 (14%)
Query: 17 KLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKI 76
K I + L D W + YTV+SAYR + + + + W + W LKI
Sbjct: 20 KAISNLALLNRDGKDRLIWKFNRHEIYTVRSAYRYAMKTLVDNVEYRILGEWLKMWSLKI 79
Query: 77 LSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACECLECT 136
+VK +WR P + + + V CP C E HVF+ CE ++ T
Sbjct: 80 PQRVKVFLWRAVRGVFPTRMRMQDKGVPCTDCCPFCETNYENDWHVFM----GCEEVK-T 134
Query: 137 VPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSNTRTPAPQ 196
+ ++DL I + + + D D++ + I A Q
Sbjct: 135 IWRTTGLWDL-----IAETVADAASFADYGDLKPVSI--------------------AIQ 169
Query: 197 LLNSSFSYLLAWQSAQIKTACPVPVVDQGAAVWSTPPAGYLKCNTD 242
L S L WQ A+ TA P Q W P G LKCN D
Sbjct: 170 L---SREALFQWQIARQTTAAPHQTQHQQTIQWQPPAQGVLKCNVD 212
>IMGA|Medtr2g056130.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 15253178-15253955 H
EGN_Mt090430 20090702
Length = 128
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
+ VE+++++F + PL S D W EK G Y V+S+YRL V + +
Sbjct: 22 YNVEVVEQMFDPEVREPHTYYPLIQSVYKDKLIWKAEKDGQYLVRSSYRLCVNTIVDNSH 81
Query: 62 PSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQR 101
S W W L++ SKV N +WR+ NCLP L R
Sbjct: 82 LHKPSGWNEIWKLEVPSKVNNFVWRVCRNCLPTWARLTYR 121
>IMGA|Medtr3g021630.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
5450314-5449526 H EGN_Mt090430 20090702
Length = 117
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 27 SSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWR 86
+ D W EK G Y+VK+AYRL + ++ + W W LK+ KVKNL+WR
Sbjct: 6 AHEEDQLIWRLEKNGQYSVKTAYRLCMENIADNSHLYRIENWGSIWKLKVPPKVKNLLWR 65
Query: 87 LGSNCLPVKTLLIQRKVDV 105
+ +CLP + L+ + V V
Sbjct: 66 ICRDCLPTQARLLDKGVTV 84
>IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr01_pseudomolecule_IMGAG_V3 1684225-1680716 E
EGN_Mt090430 20090702
Length = 659
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 83/213 (38%), Gaps = 15/213 (7%)
Query: 46 KSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDV 105
+++Y D T L + W W L++ +++ W + LP+ R +
Sbjct: 318 RASYGYRWFDHNLTQQVELVNCWSWIWRLQVSENLRHFCWLVMHASLPINAFRGSRHLTS 377
Query: 106 DVLCPVCGLAEEIPLHVFVDCGYACECLECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDV 165
D C CG E +H DC A + P+ F + Q + W + +
Sbjct: 378 DTSCQRCGAFVESDIHTLRDCPMAKKIWRHLSPTYPNDFYM---QDCQLWFKRHAV---R 431
Query: 166 EDVQALCIVLWTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIKTACPV---PVV 222
E + + IWR+RNE ++ N R + +N+ SY S+ + P V+
Sbjct: 432 ETGTRFIVACYEIWRNRNEEIFQNVRKATWESVNNIISY----HSSMVHALGPTNKCHVI 487
Query: 223 DQGAAVWSTPPAGYLKCNTDAAPPGVNSQIGAG 255
Q W+ PP ++K N D + G G G
Sbjct: 488 RQ--VRWNPPPEDFIKINVDGSSFGNPGNAGFG 518
>IMGA|AC225611_8.1 contains similarity to reverse trancriptase,
related, putative AC225611.10 67770-68780 H EGN_Mt090430
20090702
Length = 336
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTN--- 58
W ++L+ FI + LI QIPL ++SD+ W + G YTVKS Y+ + N
Sbjct: 220 WNTDILQANFIPYEQDLIKQIPLINHNNSDELMWMKDTDGLYTVKSGYQAIQSWKQNDQD 279
Query: 59 --TPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRK 102
T + + W++ W L+ + + K L+WR+ +N LP+ + + +++
Sbjct: 280 RPTTSNTSPKIWKKLWALQTIPRHKMLMWRIINNALPINSKMDKQR 325
>IMGA|Medtr4g033120.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
8119740-8120808 H EGN_Mt090430 20090702
Length = 303
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 29/182 (15%)
Query: 80 VKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACEC-----LE 134
VKNL+WR+ C+P + L+ + V+ LC +C + E HV DC A + L
Sbjct: 14 VKNLVWRVCRGCIPTRARLLDKGVNCSSLCVMCEESYEDASHVLFDCPRARKVWQDSLLL 73
Query: 135 CTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSNTRTPA 194
V SV+ + A +++ + + + + VLW++W+ RN LW N + A
Sbjct: 74 SKVNSVMWCNNTAA-----EFIFALLQELSHDQAELFASVLWSLWKSRNLRLWQN--STA 126
Query: 195 PQLLNSSFSYLLAWQSAQIKTACPVPVVDQGAAVWSTPPAGYLKCNTDAAPPGVNSQIGA 254
Q ++ S A QS W P LKCN D + + +G
Sbjct: 127 VQQTETATSRAQAVQS-----------------FWQKPAHCRLKCNVDVSFSEALNCVGF 169
Query: 255 GW 256
G+
Sbjct: 170 GF 171
>IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
29296065-29298854 H EGN_Mt090430 20090702
Length = 693
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 38 EKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTL 97
EK G+Y+V+SAYR+ V + + + W W LK K++N +W + C P +
Sbjct: 462 EKNGSYSVRSAYRIYVTKIADNSHLHVPGKWSSIWKLKFPPKIRNFVWPVCRGCFPTRAR 521
Query: 98 LIQRKVDVDVLCPVCGLAEEIPLHVFVD 125
L R + +CG E +HV ++
Sbjct: 522 LSSRGIHCPNDFVLCGTNYEDSIHVLLE 549
>IMGA|Medtr8g034900.1 contains similarity to reverse trancriptase,
related, putative chr08_pseudomolecule_IMGAG_V3
7642559-7645649 E EGN_Mt090430 20090702
Length = 541
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVP-DMTNTP 60
W +L F+ D I IPL ++ D+ W + G YTV+S Y+ + +T
Sbjct: 220 WNNSILNTHFLSIDKDQIECIPLINLANDDEIIWHFNQDGNYTVRSGYQAIQNWKITTIS 279
Query: 61 APSLQS----FWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAE 116
PS + W++ W + + + K ++WR+ +N LP+++ L +R + + LCP L +
Sbjct: 280 EPSNSNIETNLWKKLWTIHTIPRHKMILWRVLNNTLPLRSELGKRGILCNPLCPRYLLED 339
Query: 117 EI 118
EI
Sbjct: 340 EI 341
>IMGA|Medtr7g077740.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
16448205-16447339 E EGN_Mt090430 20090702
Length = 254
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 14/191 (7%)
Query: 30 SDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGS 89
SD W WD++ G Y+V AY L P W + ++ KV WRL
Sbjct: 44 SDRWQWDSDYGGGYSVGGAYHHLTTQAEPPDVPLGDLIWHK----QVPLKVSIFAWRLLR 99
Query: 90 NCLPVKTLLIQRKVDVDVLC---PVCGLAEEIPLHVFVDCGYACECLECTVPSVLAVFDL 146
+ LP K L +R + C CG+ EE H+F+ C L + S++ +
Sbjct: 100 DRLPTKNHLFRRGIINSEACMCVTGCGM-EETTSHLFIHC-TTFGSLWHLIRSLIGMSGA 157
Query: 147 HAFQRIEDWLQNVFLGMDVEDVQAL-----CIVLWTIWRHRNEVLWSNTRTPAPQLLNSS 201
F + ++Q + + Q+ + +W +W RN L++N +T L +
Sbjct: 158 DPFNINDHFIQFIHSTGHSKARQSFLQLIWLLCVWVVWNERNNRLFNNIQTTVDNLADKV 217
Query: 202 FSYLLAWQSAQ 212
+ L W A
Sbjct: 218 RFHSLWWLQAN 228
>IMGA|Medtr7g127430.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 29873082-29875620 E
EGN_Mt090430 20090702
Length = 344
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 171 LCIVLWTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIKTACPVPVVDQGAAVWS 230
+ ++LW +WR RN+ +W P + + L WQ + ++A PV Q A+W
Sbjct: 213 VAVMLWCLWRRRNDKVWDGELKPINIAIQLAREALFQWQEVRKRSAEPVQNQQQQVAIWQ 272
Query: 231 TPPAGYLKCNTDAA 244
P ++KCN DAA
Sbjct: 273 PPDEEFVKCNVDAA 286
>IMGA|Medtr1g140870.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31282395-31281349 H
EGN_Mt090430 20090702
Length = 309
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 8/142 (5%)
Query: 43 YTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRK 102
Y+VK+ Y+ L + + ++ W+ W + K+K L W LP + +L R
Sbjct: 5 YSVKAGYQWLTSHVNSNVMLAIAGSWKWIWRVAAPEKIKFLFWTAYHQSLPTRGMLQHRG 64
Query: 103 VDVDVLCPVCGLAEEIPLHVFVDCGYACEC-LECTVPSVLAVFDLHAFQRIEDWLQNVFL 161
+ CP C + E +H F DC +A + L ++ + Q + WL+
Sbjct: 65 MLHSASCPRCPMENENIMHCFRDCVFARQLWLSLGFDNI----NFFMEQSVSSWLRR--- 117
Query: 162 GMDVEDVQALCIVLWTIWRHRN 183
G + ++ W IWR RN
Sbjct: 118 GSESDNKSLFMSACWWIWRARN 139
>IMGA|Medtr5g068610.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 24592281-24593243 H
EGN_Mt090430 20090702
Length = 320
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 12/173 (6%)
Query: 78 SKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACECLECTV 137
+K K +WR LP + L + V CP C E HVF+ C TV
Sbjct: 11 AKGKFFLWRAVRGVLPTRMRLQDKGVPCTDCCPFCETNYENDWHVFMGCEEVK-----TV 65
Query: 138 PSVLAVFDLHAFQRIEDW--LQNVFLGM----DVEDVQALCIVLWTIWRHRNEVLWSNTR 191
+ DL A + + D N F + + + ++LW IWR RN+ +W
Sbjct: 66 WRTAGLCDLIA-EIVADAASFANCFFSLLCRLTTNKCKDMTMILWCIWRRRNDKVWDGDL 124
Query: 192 TPAPQLLNSSFSYLLAWQSAQIKTACPVPVVDQGAAVWSTPPAGYLKCNTDAA 244
+ + L WQ A+ TA P Q W P G LKCN DAA
Sbjct: 125 KLVSIAIQLAREALFQWQIARQNTAEPHQTQQQQTIQWQPPAQGVLKCNVDAA 177
>IMGA|Medtr7g080740.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
17251172-17255125 E EGN_Mt090430 20090702
Length = 230
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 34/189 (17%)
Query: 31 DDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSN 90
D W WD + YTV+ AY+ L T+ P+++ + W ++ KV L WR+ +
Sbjct: 30 DRWQWDPDPHEGYTVRGAYQAL----TSMEVPTIEGGGELIWHKQVPLKVSILAWRMLKD 85
Query: 91 CLPVKTLLIQRKV--DVDVLC-PVCGLAEEIPLHVFVDCGYACECLECTVPSVLAVFDLH 147
LP ++ L +R + + C CGL EE H+F+ C VF
Sbjct: 86 KLPTRSNLQRRGILAAANTTCLSGCGL-EETASHIFLYC---------------EVFG-S 128
Query: 148 AFQRIEDWLQNVFLGMDVEDVQAL-----CIVLWTIWRHRNEVLWSNTRTPAPQLLNSSF 202
+Q I W +GM ++ ++ + +W IW RN L+ N T Q+L +
Sbjct: 129 LWQHIRSW-----IGMTLKARRSFLQLIWLLCVWLIWNERNNRLFKNIETLIIQMLEKAK 183
Query: 203 SYLLAWQSA 211
+ L W A
Sbjct: 184 YHSLWWLKA 192
>IMGA|Medtr6g094210.1 RNA polymerase Rpb8;
chr06_pseudomolecule_IMGAG_V3 20682582-20686495 H
EGN_Mt090430 20090702
Length = 190
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 39 KRGTYTVKSAYRLLVPDMT----NTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPV 94
++ Y Y PD+T N ++ W R LK+ +KVK +WR NCLP
Sbjct: 96 RKPPYGTFEYYHPQTPDVTAIIINNSYLHIEENWMRISKLKVPNKVKLFLWRTARNCLPT 155
Query: 95 KTLLIQRKVDVDVLCPVCGLAEEIPLHVF 123
+ L +++VD +CP C +E H+F
Sbjct: 156 RISLQRKQVDYPSICPCCDSEDEADSHLF 184
>IMGA|Medtr5g088710.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
34427458-34427919 H EGN_Mt090430 20090702
Length = 153
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 1 LWKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTP 60
+W L+ +F +LI+ PL D W EK G Y+V SAYR+ V ++ +
Sbjct: 56 VWNTTLISNMFNHNTTQLILNTPLQPLVHEDKLTWKAEKNGNYSVSSAYRICVTEIADKS 115
Query: 61 APSLQSFWQRFWGLKILSKVKNLIWR----LGSNCLP 93
+ + W LK+ ++N +WR L + C+P
Sbjct: 116 HLHIPARWNLTRKLKVPPMIRNFVWRVSGLLPNTCMP 152
>IMGA|Medtr1g065590.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr01_pseudomolecule_IMGAG_V3
13071141-13070680 H EGN_Mt090430 20090702
Length = 153
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 52/131 (39%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
W EL+ ++ I ++ L D W+ YT+KS Y++ +
Sbjct: 14 WNQELIASFMNAQETFDICKVHLHSRVDHDAIIWEPSPNSAYTIKSDYKMCLSLSDQGTH 73
Query: 62 PSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLH 121
W+ W ++I K+K+ +W L CL + L V C VC E +H
Sbjct: 74 YQAIDDWRLIWNMRIHQKLKHFLWTLLHYCLSICFNLQDHGVHRQSACVVCNTDIEDEMH 133
Query: 122 VFVDCGYACEC 132
+F+ +A C
Sbjct: 134 MFIHFTFAINC 144
>IMGA|Medtr8g103050.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr08_pseudomolecule_IMGAG_V3
22866893-22867695 H EGN_Mt090430 20090702
Length = 219
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 98 LIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACECLECTVPSVLAVFDLHAFQRIEDWLQ 157
++QR V C C EE HVFV C A S + + + FQ + + +
Sbjct: 5 ILQRHVSCTNRCLWCHCEEETNWHVFVGCEVAS--WFSVGLSAMLLPRVSLFQSLPELIF 62
Query: 158 NVFLGMDVEDVQALCIVLWTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIKTAC 217
++ V+ + ++LW +W RN+V+W+++R ++ + S W+ Q
Sbjct: 63 DICFKESVDTGGCIAVLLWQLWATRNDVVWNSSRDTPLEIGRLALSNWQQWKFTQ----- 117
Query: 218 PVPVVDQGAAVWSTPPAGYLKCNTDAAPPGVNSQIG 253
W P G+LKCN D A NS IG
Sbjct: 118 --------EIRWEKPANGWLKCNVDVA---FNSSIG 142
>IMGA|Medtr8g128940.1 RNA-directed DNA polymerase, related
chr08_pseudomolecule_IMGAG_V3 30299266-30298795 H
EGN_Mt090430 20090702
Length = 120
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 5 ELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVP-DMTNT---P 60
L+KE+F E + I+ IPL SD W E+ G ++V+SA+ L+ D NT
Sbjct: 16 HLIKEIFSEFEANQILNIPLSWRLPSDKRVWHWERNGNFSVRSAHHLIKDVDARNTLEAS 75
Query: 61 APSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQR 101
+ + Q W+ W +K VKN + RL + LP + L ++
Sbjct: 76 STNGQEIWKAVWRIKAPHSVKNFLRRLTRDILPARCRLKRK 116
>IMGA|Medtr6g080700.1 Putative non-LTR retroelement reverse
transcriptase, related, chr06_pseudomolecule_IMGAG_V3
16232808-16240846 H EGN_Mt090430 20090702
Length = 357
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 79/192 (41%), Gaps = 15/192 (7%)
Query: 30 SDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGS 89
+D W W + +YT+K AY T P +S + W +I SKV WRL
Sbjct: 105 TDRWRWLPDPTSSYTIKRAYNFF----TTIGKPLDRSLFVDVWHKRIPSKVSMFAWRLFR 160
Query: 90 NCLPVKTLLIQRKV--DVDVLCPVCGLAEEIPLHVFVDCGYACECLECTVPSVLAVFD-L 146
N LP K L+ R+V +V C E H+FVDC + + V L +F +
Sbjct: 161 NRLPTKDNLLHRRVISPENVTCVSGCRHPETANHLFVDCIFF-SSIWYQVWQWLDIFSVM 219
Query: 147 HAFQRIEDWLQNVFLGMDVEDVQALCI---VLWTIWRHRNEVLWSNTRTPAPQLLN---- 199
H + + N V V I +W +W+ RN ++ N LL
Sbjct: 220 HDLRHYYNQFTNRAGLPRVTHVFLRIIWFATIWVLWKARNNCIFQNAVFSPDGLLEKMKL 279
Query: 200 SSFSYLLAWQSA 211
+SF +L A Q+
Sbjct: 280 NSFLWLKANQTT 291
>IMGA|Medtr3g036550.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
9698431-9699081 H EGN_Mt090430 20090702
Length = 216
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 84/212 (39%), Gaps = 48/212 (22%)
Query: 30 SDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGS 89
SD W W+ EK YTV+ AY L AP+L W ++ KV + WRL
Sbjct: 19 SDRWQWELEKHAGYTVRDAYHALAY----MAAPTLDKTANLVWHQQVPLKVSIVAWRLLK 74
Query: 90 NCLPVKTLLIQRKVD--VDVLC-PVCGLAEEIPLHVFVDCGYACECLECTVPSVLAVFDL 146
+ LP K L +R + + LC CG EE H+F L C V L
Sbjct: 75 DRLPTKINLQRRDIAQVTNTLCVSGCGGIEESASHLF---------LHCPVFGSL----- 120
Query: 147 HAFQRIEDWLQNVFLGMDVEDVQA-----------------------LCIVLWTIWRHRN 183
+Q I W+ +G+D ++V A + +W +W RN
Sbjct: 121 --WQLIRSWIG--VIGVDTDNVSAHFYQFIHYSGYTKAARRSFLLLLWLLCVWLLWNERN 176
Query: 184 EVLWSNTRTPAPQLLNSSFSYLLAWQSAQIKT 215
L+ NT TP QLL+ + L W A T
Sbjct: 177 NRLFKNTETPIEQLLDKVKFHSLWWLKANKTT 208
>IMGA|Medtr3g080050.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
18725780-18724244 H EGN_Mt090430 20090702
Length = 377
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 30/197 (15%)
Query: 83 LIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYA-------CECLEC 135
LIWRL + LP L+ R + +C +C E H+F C +A + C
Sbjct: 48 LIWRLFHHRLPTDENLLSRGLYFPSVCNLCCKEPETSKHLFFGCTFASCIWSWLASVINC 107
Query: 136 TVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSNT----R 191
V S+ ++ DL+ + LQ V + A+ + IW RN++ ++NT R
Sbjct: 108 NV-SISSIEDLNTLLNKQCSLQ-----CKVVLISAVIHSVNAIWFARNQIRFNNTKIQWR 161
Query: 192 TPAPQLL---NSSFSYLLAWQSAQIK----------TACPVPVVDQGAAVWSTPPAGYLK 238
+ +++ N S +Y S I P + +W P ++K
Sbjct: 162 SSIARIIADVNLSGNYTSKVSSPSISDFVLLKNFNVNINPPRALTIKEVIWQPPIFDWVK 221
Query: 239 CNTDAAPPGVNSQIGAG 255
CNTD A G++ GAG
Sbjct: 222 CNTDGAASGISGLAGAG 238
>IMGA|Medtr4g157980.1 contains similarity to reverse trancriptase,
related, related chr04_pseudomolecule_IMGAG_V3
39513788-39514207 H EGN_Mt090430 20090702
Length = 139
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 1/129 (0%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNT-P 60
W +L+ + + I Q+PL D + W K Y+VKS Y + N
Sbjct: 8 WNQTILENNLLSFEKDHINQLPLIKEDIEDIFMWMYTKDNIYSVKSGYNFIREWYQNRGQ 67
Query: 61 APSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPL 120
S + Q W L + + K+ + R+ ++ +PV+ L + + D+LCP C E
Sbjct: 68 RTSNNTANQTIWNLNTIPRHKDFLGRILNDPVPVRYALHLKGLLNDMLCPRCVTKMETLN 127
Query: 121 HVFVDCGYA 129
HV ++C +A
Sbjct: 128 HVIMECHFA 136
>IMGA|Medtr3g106940.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
27054842-27053784 E EGN_Mt090430 20090702
Length = 348
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 70/188 (37%), Gaps = 8/188 (4%)
Query: 68 WQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCG 127
W W L++ K K LIW N +P +LL +R + C CG +E LH DC
Sbjct: 30 WSWIWNLQVPEKYKFLIWLACQNVVPTLSLLHRRNIAPSPTCARCGEEDETFLHCVRDCH 89
Query: 128 YACECLECTVPSVLAVFDLHAFQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLW 187
++ + D DW + +GM LW +WRHRN +
Sbjct: 90 FSRSIWQ---KIGFTCNDFFTATSAHDWFK---IGMSSSLPDIFFAGLWWVWRHRNLMCL 143
Query: 188 SNTRTPAPQLLNSSFSYLLAWQSAQIKTACPVPVVDQGAAVWSTPPAGYLKCNTDAAPPG 247
+N +L N+ S SA + V D+ W+ N D + G
Sbjct: 144 NNENMSLFRLCNNIVSAAADINSA-FDSEENVNHSDRFVK-WNNRNHHDHILNVDGSCLG 201
Query: 248 VNSQIGAG 255
S+ G G
Sbjct: 202 TPSRTGYG 209
>IMGA|Medtr3g039830.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
10661494-10660229 E EGN_Mt090430 20090702
Length = 241
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 15/179 (8%)
Query: 31 DDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIWRLGSN 90
D W W Y V SAY L+ ++N + + S W ++ K+ WRL +
Sbjct: 34 DKWIWHLHASNNYNVTSAYNHLLTPISNNLSATHTS---EIWNKEVPLKISLFAWRLLRD 90
Query: 91 CLPVKTLLIQRKV---DVDVLCPVCGLAEEIPLHVFVDCGYACECLECTVP--SVLAVFD 145
LP LI+R + + + CG+ E+ H+F+ C + + C S VF
Sbjct: 91 RLPTTDNLIKRHILLPNAQLCVGGCGMLEDAK-HLFLSCDFFGKLWYCISHWLSYHIVFP 149
Query: 146 LHAFQRIEDWLQNVFLGMDVEDVQALCIV----LWTIWRHRNEVLWSNTRTPAPQLLNS 200
H + + G + A ++ +W IW RN ++ T QLL+
Sbjct: 150 EHVPDHLYQF--GTLGGFSKNNRSAFHLIWLSCVWVIWLERNARVFHQTEASINQLLDK 206
>IMGA|Medtr2g045730.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
12697004-12697693 H EGN_Mt090430 20090702
Length = 166
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 26 LSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAPSLQSFWQRFWGLKILSKVKNLIW 85
+ S D W W N G Y+++ Y+ L+ T+ + W W L + S ++ +W
Sbjct: 1 MHDSPDVWVWTNRTSGIYSIQEGYQWLMGAHTSLLG---EESWNWIWHLCVPSNIRFFLW 57
Query: 86 RLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACECL 133
+L + +P +++L+ R V C +C E LH C A + L
Sbjct: 58 QLCHDSVPFRSVLLSRNV-----CSICNQGSEDMLHALYPCPRAKDVL 100
>IMGA|Medtr2g022180.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 5859777-5859211 H
EGN_Mt090430 20090702
Length = 188
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 94 VKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGYACE-----CLECTVPSVLAVFDLHA 148
++ L +R + CPVC + E + + C + E CL+ + H+
Sbjct: 1 MRKKLQERGANCPSSCPVCDNSVEQTIDLLFGCQFNKEVWDVVCLDVIEKRMTITSSPHS 60
Query: 149 FQRIEDWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVLWSNTR-TPAPQ--LLNSSFSYL 205
+ N D V + +V+W++W +RN ++W+N R TP+ Q ++ + S
Sbjct: 61 V------ILNSCTSEDSILVSKMAMVIWSLWCNRNNIIWNNKRSTPSQQVNVMGMANSLC 114
Query: 206 LAWQSAQIKTACPVPVVDQG-AAVWSTPPAGYLKCNTDAA 244
W+ A + + + W PP G+LKCN DA
Sbjct: 115 EDWRLANYISENSLDSCSENPIQSWVKPPEGWLKCNVDAG 154
>IMGA|Medtr7g077260.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
16160383-16159664 H EGN_Mt090430 20090702
Length = 201
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 31 DDWFWDNEKRGTYTVKSAYRLLVPDMTNTPAP---SLQSFWQRFWGLKILSKVKNLIWRL 87
D+W W N G Y+VKSAY L+ + + P +LQ+ R W SKV W+L
Sbjct: 43 DEWSWTNSPDGRYSVKSAYYQLLKGLPTSGTPGGMTLQAV-SRVWKSWASSKVIVFSWQL 101
Query: 88 GSNCLPVKTLLIQRKVDV---DVLCPVCGLAEEIPLHVFVDC 126
+ +P + LI+R V + V C C + +H+F+ C
Sbjct: 102 LLDRIPTRNNLIRRGVPILVDRVGCVFCDSQSKSAVHLFLSC 143
>IMGA|Medtr1g133000.1 Putative non-LTR retroelement reverse
transcriptase, related, chr01_pseudomolecule_IMGAG_V3
29847563-29845198 H EGN_Mt090430 20090702
Length = 335
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 41/188 (21%)
Query: 27 SSSSDDWFWDNEKRGTYTVKSAYRLL--VPDMTNTPAPSLQSFWQRFWGLKILSKVKNLI 84
S+ +D+W+W E+ G ++V S Y+ L V + N + + + W SKV L
Sbjct: 99 SNGTDEWWWKLEEDGRFSVSSLYKKLEVVAGIENEWGLEEKHVFSQVWKSPAPSKVVALS 158
Query: 85 WRLGSNCLPVKTLLIQRKV---DVDVLCPVCGLAEEIPLHVFVDCGYACECLECTVPSVL 141
WR N +P + L+ ++ + C +C L EE H+F+ C V SV
Sbjct: 159 WRSLLNRIPTRLNLLYHHALPPNLSLHCVLCDLEEESTNHLFLHCN--------VVSSV- 209
Query: 142 AVFDLHAFQRIEDWLQNVFLGMDVEDVQALC--------------------IVLWTIWRH 181
+++++ W + F+ V LC LW IWR
Sbjct: 210 -------WEKVKRWFEIEFITPPNLFVHWLCWNAGRTTSKLFQMGRRLVWHTTLWVIWRA 262
Query: 182 RNEVLWSN 189
RN +++N
Sbjct: 263 RNNRIFNN 270
>IMGA|Medtr7g105970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 24393992-24396620 H
EGN_Mt090430 20090702
Length = 287
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 163 MDVEDVQALCIVLWTIWRHRNEVLWSNTRTPAPQLLNSSFSYLLAWQSAQIKTACPVPVV 222
+ + V + LW++W+ RN LW N TP+ + N + L W Q +
Sbjct: 65 LSISQVALAAMTLWSLWKCRNSKLWDNVDTPSLVVCNRARDTLYEWSYMQHANNLVQEIT 124
Query: 223 DQGAAVWSTPPAGYLKCNTDAAPPGVNSQIGAG 255
A+W PP +KCN + A NS +G G
Sbjct: 125 HD--ALWEKPPLTVVKCNVECALFNNNSIMGYG 155
>IMGA|Medtr3g098050.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
23637089-23637874 H EGN_Mt090430 20090702
Length = 200
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 12/127 (9%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTPA 61
W+ E++ E +L++ I + ++ D W W E G+Y V+S Y LL
Sbjct: 72 WEEEMVTEC------RLLLDIVVFQDTTGDQWRWRLENSGSYYVRSVYELLTKAENALMN 125
Query: 62 PSLQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRK-VDVDVLCPVCGLAE-EIP 119
W R+ LK WRL N LP K L+ R +D D V G E +
Sbjct: 126 AVSGLIWHRYVPLKEFI----FAWRLLRNRLPTKVNLVARGMIDSDDHLCVSGCGEVDTD 181
Query: 120 LHVFVDC 126
H+FV C
Sbjct: 182 HHLFVSC 188
>IMGA|Medtr5g102190.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
40926702-40928333 H EGN_Mt090430 20090702
Length = 272
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 71 FWGLK--ILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAEEIPLHVFVDCGY 128
FW K +L K K L W NC P LL R + +C CGL +E LH DC +
Sbjct: 14 FWTPKKMLLEKHKFLFWLACHNCDPTLLLLNHRNIAPSAICSRCGLDDETFLHCVCDCNF 73
Query: 129 ACECLECTVPSVLAVFDLHAFQRIE--DWLQNVFLGMDVEDVQALCIVLWTIWRHRNEVL 186
+ ++ D + + ++ +WL++ F+G+ A +W W H+N +
Sbjct: 74 S---------RIIWHHDANFYSNMDVINWLKDSFMGLHSFFFVA---TIWWAWHHQNLMC 121
Query: 187 WSNTRTPAPQL 197
SN +L
Sbjct: 122 LSNENCLLSRL 132
>IMGA|Medtr3g019780.1 H+-transporting two-sector ATPase, alpha/beta
subunit, central region, related, related
chr03_pseudomolecule_IMGAG_V3 4193373-4194327 H
EGN_Mt090430 20090702
Length = 239
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 1 LWKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMTNTP 60
+W+++LL EL L++ L S D WFW G Y+VKSAY L+ +
Sbjct: 8 VWELDLLAEL-------LVVAARLSRSVREDRWFWATNHDGCYSVKSAYSNLLRGLLVEA 60
Query: 61 APS---LQSFWQRFWGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLA 115
AP LQ+ W SKV W+L + +P + LI+R V + V V GL
Sbjct: 61 APEGVVLQAV-SSVWNSWAPSKVIVFSWQLLIDRIPSRRNLIRRGVPLPVGFYVVGLG 117
>IMGA|Medtr4g107980.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 23734799-23733694 H
EGN_Mt090430 20090702
Length = 255
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 31 DDWFWDNEKRGTYTVKSAYRLLVP-DMTNTPAPSLQS---FWQRFWGLKILSKVKNLIWR 86
D W EK G ++VK AY +L ++++ P S S W R W + ++V N IWR
Sbjct: 10 DKLVWPAEKNGIFSVKFAYHILCNINLSHLPTSSSHSHSKLWNRIWSSHLPTRVWNFIWR 69
Query: 87 LGSNCLPVKTLLIQR 101
L N +P + L +R
Sbjct: 70 LAKNIIPTRGNLKRR 84
>IMGA|Medtr3g125040.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
31944726-31943241 H EGN_Mt090430 20090702
Length = 351
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 2 WKVELLKELFIERDWKLIIQIPLGLSSSSDDWFWDNEKRGTYTVKSAYRLLVPDMT-NTP 60
W +L+K F+ D I QIP+ +S +D++ W +E+ G Y+VK+ Y++L + +
Sbjct: 131 WDTDLIKNNFLHIDRDNITQIPIINTSKNDEYMWMHEQNGVYSVKNGYQILQSRKSIRSL 190
Query: 61 APSLQSFWQRFW 72
+PS + RFW
Sbjct: 191 SPSTSNNNIRFW 202
>IMGA|Medtr8g119160.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 26940646-26936997 H
EGN_Mt090430 20090702
Length = 255
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 72 WGLKILSKVKNLIWRLGSNCLPVKTLLIQRKVDVDVLCPVCGLAE-EIPLHVFVDCGYAC 130
W L + K+K+ WRL NCLP ++ L R V C C + E +H+F+ C +A
Sbjct: 30 WSLHVPPKIKHFFWRLLHNCLPTRSNLQGRGVPCQSACVTCNNNDLEDEMHLFMHCKFAI 89
Query: 131 EC 132
+C
Sbjct: 90 DC 91