Jatropha Genome Database

JcCA0275671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0275671.10 + phase: 0 /pseudo/partial
         (252 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g163420.1 Zinc finger, Mcm10/DnaG-type chr03_pseudomo...   275   2e-74

>IMGA|Medtr3g163420.1 Zinc finger, Mcm10/DnaG-type
           chr03_pseudomolecule_IMGAG_V3 42952387-42949248 E
           EGN_Mt090430 20090702
          Length = 412

 Score =  275 bits (702), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 131/191 (68%), Positives = 154/191 (80%), Gaps = 1/191 (0%)

Query: 48  DLSVFRDAVQDCLDHDAKPVHKSEKLKQARNSNDVQVEKYSGLRIRNQLVTPAELSERLS 107
           D+SVFRDAVQDCL       + + K      ++D Q++K+SGLRI NQ +TPAEL E + 
Sbjct: 47  DMSVFRDAVQDCLHSQPSNPNPNPKSITKPLTDDPQLDKFSGLRITNQCLTPAELRESVQ 106

Query: 108 DIRFVRLPAIKNLLVGDTLSGCWATIGVLTEKGNPRTSSVGKSYCIWKIGCLDENTISLF 167
           DIRFVRLP IKNL+ GD+ SG W T+GVLTEKG  +TSS GKSYCIWKIG LDENTISLF
Sbjct: 107 DIRFVRLPVIKNLVNGDSFSGSWVTVGVLTEKGIQKTSSNGKSYCIWKIGSLDENTISLF 166

Query: 168 LFGDAYQQNCKEQAGTVFALFNCTVRRDNAG-GFSLSVYSPNQIIKMGTSIDYGVCKGKR 226
           LFG+AYQ+NC+E+ GTVFALFN TVR+D  G GFSLS+YSPNQI+KMGTS+DYGVCKGKR
Sbjct: 167 LFGNAYQRNCQEKEGTVFALFNSTVRKDAKGNGFSLSIYSPNQIMKMGTSVDYGVCKGKR 226

Query: 227 KDGMSCTVIIN 237
            DGMSCT+ IN
Sbjct: 227 ADGMSCTLAIN 237