Jatropha Genome Database

JcCA0275141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0275141.10 - phase: 0 /partial
         (197 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g100710.1 AAA ATPase, central region chr03_pseudomole...   185   1e-47
IMGA|Medtr3g100750.1 AAA ATPase, central region chr03_pseudomole...   174   3e-44
IMGA|Medtr3g163740.1 DNA polymerase III clamp loader subunit, C-...    70   6e-13
IMGA|Medtr5g106490.1 Ubiquitin-associated; AAA ATPase chr05_pseu...    49   1e-06

>IMGA|Medtr3g100710.1 AAA ATPase, central region
           chr03_pseudomolecule_IMGAG_V3 24169522-24164910 E
           EGN_Mt090430 20090702
          Length = 339

 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/183 (50%), Positives = 121/183 (66%), Gaps = 8/183 (4%)

Query: 18  PWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 77
           PWVEKYRP ++ D+   E+ V  L      G+ P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 78  N-YREAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKLVILDEADSMTS 129
             Y+  VLELNASDDRGI+VVR KIK FA       + K   P   +K+++LDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIVLDEADSMTE 129

Query: 130 GAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEA 189
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  L+++ +  R++ + + 
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICKE 189

Query: 190 EKV 192
           E +
Sbjct: 190 EGI 192


>IMGA|Medtr3g100750.1 AAA ATPase, central region
           chr03_pseudomolecule_IMGAG_V3 24245152-24251862 F
           EGN_Mt090430 20090702
          Length = 355

 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 118/177 (66%), Gaps = 4/177 (2%)

Query: 19  WVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 78
           WVEKYRP  + D+  + D V  +  +  +  +P+L+L GPPGTGKT++ILA+A +L G  
Sbjct: 34  WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 93

Query: 79  YREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KLVILDEADSMTSGAQQAL 135
           Y   +LELNASDDRGIDVVR +I+ FA  + +L  G     KLV+LDEAD+MT  AQ AL
Sbjct: 94  YHNMILELNASDDRGIDVVRQQIQDFASTQ-SLSFGVKPSVKLVLLDEADAMTKDAQFAL 152

Query: 136 RRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEAEKV 192
           RR +E Y+ STRFAL CN  +KII  +QSRC   RF+ L    +  RL  V+ AE++
Sbjct: 153 RRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERL 209


>IMGA|Medtr3g163740.1 DNA polymerase III clamp loader subunit,
           C-terminal chr03_pseudomolecule_IMGAG_V3
           43063765-43070872 E EGN_Mt090430 20090702
          Length = 800

 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 34/211 (16%)

Query: 15  YDIPWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALAHE 73
           Y+  W  KY+P  +AD + N D   +L+ + + G   N  I  GPP  GK + I A+  E
Sbjct: 418 YEYLWATKYQPKILADFICNRDKALQLKALVKGGCGCNHFIFEGPPNVGKRSMIRAMLRE 477

Query: 74  LLGPN-------YREAVL-------------------ELNASDDRG------IDVVRNKI 101
           + G +       Y++  L                   E+N S+ +G      +++ +   
Sbjct: 478 VFGADGVQVTEEYKDFNLKGEMVENLKLRVQKSLHHVEVNLSEAKGYEKNVIVELFKETY 537

Query: 102 KMFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEP 161
                  +   P   + +IL EA+ ++  +   ++  +E Y    +    C+  S+ ++P
Sbjct: 538 GKVINSSLPCSPENCQAIILYEAEKLSLESVLYIKWLVEKYKGCNKLFFCCSDESR-LQP 596

Query: 162 IQSRCALVRFSRLSDQEILGRLMVVVEAEKV 192
           IQS C  VR S  S Q+I+  L  +V+ E +
Sbjct: 597 IQSYCTTVRLSSPSTQQIVKILEYIVQEEGI 627


>IMGA|Medtr5g106490.1 Ubiquitin-associated; AAA ATPase
           chr05_pseudomolecule_IMGAG_V3 42825725-42823627 E
           EGN_Mt090430 20090702
          Length = 551

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 12/170 (7%)

Query: 18  PWVEKYRPNKIADIVGNE---DTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 74
           P  E+ RP  + ++VG +    T S L+   +   +P+++L GPPGTGKTT   A+ +  
Sbjct: 115 PLYERLRPRTLDEVVGQDHLLSTNSILRSSIQRKRLPSILLWGPPGTGKTTIAKAIVNSS 174

Query: 75  L----GPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKLVILDEADSMTSG 130
                 P YR   L    S   G+  VR  +     +KV +   +  ++ +DE       
Sbjct: 175 STTKDSPLYRFVSLSAVTS---GVKDVREAVD--EARKVRVKTNQTTVLFVDEVHRFNKS 229

Query: 131 AQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEIL 180
            Q +    +E  S     A   N S  +I P+ SRC ++  + L    ++
Sbjct: 230 QQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLI 279