Jatropha Genome Database

JcCA0274811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0274811.20 + phase: 1 /TE/partial
         (371 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g077130.1 Zinc finger, CCHC-type chr06_pseudomolecule...    86   2e-17
IMGA|Medtr3g044270.1 Peptidase S8 and S53, subtilisin, kexin, se...    75   5e-14
IMGA|Medtr5g082240.1 Peptidase S8 and S53, subtilisin, kexin, se...    75   5e-14
IMGA|Medtr5g089840.1 copia LTR rider, related chr05_pseudomolecu...    64   1e-10
IMGA|Medtr4g110620.1 polyprotein-like, related chr04_pseudomolec...    54   1e-07

>IMGA|Medtr6g077130.1 Zinc finger, CCHC-type
           chr06_pseudomolecule_IMGAG_V3 15158354-15162093 E
           EGN_Mt090430 20090702
          Length = 532

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 13/274 (4%)

Query: 98  MNFKY--QEGTSVADHLSEMQATIHQLSNMGIKFDDKILGLMVLASLPESWETLKISITN 155
           MN KY  +E T     ++E    I +L    I   D  +   ++  LP SW+  K  + +
Sbjct: 123 MNVKYTAEEATKQKFVINEYHQLIEELKAENIILPDVFVAAALVEKLPSSWDDYKQQLKH 182

Query: 156 STPHSGVSWKFVKNAVLNEEMRRKAHNRSSSQSDILLADAKRNNHPRGRSQSRSSNTRDK 215
              H  +S   +   ++ E+  RK    + +++    A+  +NN    R Q R  N  D 
Sbjct: 183 K--HKQMSLNDLIRHIIIEDTSRKECGAARAKALESRANLIQNN---ARKQQRYENKSDH 237

Query: 216 SRGRSNKF--ANI-MCHHCGKKGHIKRYCWKFKSDQEKIKGKAKKEESSDDEANVIAEFQ 272
           +   +N    AN+  C+ CGKKGH   +C   K + +  K KA   +  D + +      
Sbjct: 238 ALKVTNPNFKANLGECYVCGKKGHKAYHCRYRKVNGQPPKPKANLTQGDDKKYDDDDVIA 297

Query: 273 LFIEYTINHATQETSWVIDSGATLPATSQRENFSSYTP--DNLGVVKIADDKLLKVVGKG 330
             I   ++       WV+DSGAT    ++RE F+SY    D+   V + D +   V GKG
Sbjct: 298 AVIS-KVHLVNDVQKWVVDSGATRHICAKREAFTSYISVGDDEDQVYLGDSRTTAVNGKG 356

Query: 331 DICLETENGSRFNFKDVVHVPDMHSNLISVGRLD 364
            + L+  +G      DV++VP + +NLISV  L+
Sbjct: 357 KVILKLTSGKTLALSDVLNVPTIRTNLISVALLN 390


>IMGA|Medtr3g044270.1 Peptidase S8 and S53, subtilisin, kexin,
           sedolisin chr03_pseudomolecule_IMGAG_V3
           12336621-12336989 H EGN_Mt090430 20090702
          Length = 122

 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 2/101 (1%)

Query: 270 EFQLFIEYTINHATQETSWVIDSGATLPATSQRENFSSYTPDNLGVVKIADDKLLKVVGK 329
           E  L  E+ I      +SWVIDSG ++   S R+ FSSYT    G VK+A + +LK VG 
Sbjct: 14  ELLLVEEHDI--VDSASSWVIDSGISVHVISTRDVFSSYTSGEFGDVKLAHEGVLKCVGH 71

Query: 330 GDICLETENGSRFNFKDVVHVPDMHSNLISVGRLDAENFYS 370
            D+ LE  NG++   KD  HV D+  NL+SV +L  E + S
Sbjct: 72  EDVNLEMSNGAKLTLKDEKHVLDIQLNLLSVAKLCDEGYDS 112


>IMGA|Medtr5g082240.1 Peptidase S8 and S53, subtilisin, kexin,
           sedolisin chr05_pseudomolecule_IMGAG_V3
           30911334-30910966 H EGN_Mt090430 20090702
          Length = 122

 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 2/101 (1%)

Query: 270 EFQLFIEYTINHATQETSWVIDSGATLPATSQRENFSSYTPDNLGVVKIADDKLLKVVGK 329
           E  L  E+ I      +SWVIDSG ++   S R+ FSSYT    G VK+A + +LK VG 
Sbjct: 14  ELLLVEEHDI--VDSASSWVIDSGISVHVISTRDVFSSYTSGEFGDVKLAHEGVLKCVGH 71

Query: 330 GDICLETENGSRFNFKDVVHVPDMHSNLISVGRLDAENFYS 370
            D+ LE  NG++   KD  HV D+  NL+SV +L  E + S
Sbjct: 72  EDVNLEMSNGAKLTLKDEKHVLDIQLNLLSVAKLCDEGYDS 112


>IMGA|Medtr5g089840.1 copia LTR rider, related
           chr05_pseudomolecule_IMGAG_V3 34952559-34951978 H
           EGN_Mt090430 20090702
          Length = 154

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 2/112 (1%)

Query: 75  WDKLEELYASKSGNNQLFYLTKLMNFKYQEGTSVADHLSEMQATIHQLSNMGIKFDDKIL 134
           W+KLE LY +K  +N+L    +  N +  EGT ++DHLS +   + +L ++ +K DD+  
Sbjct: 22  WEKLEGLYQAKGISNRLLLKEQFHNLRMDEGTKISDHLSTLNNIVSELESIEVKIDDEDK 81

Query: 135 GLMVLASLPESWETLKISITNSTPHSGVSWKFVKNAVLNEEMRRKAHNRSSS 186
            L ++ SLP S+  LK  +        +S++ V   +++EEM  K+   +SS
Sbjct: 82  TLRIILSLPPSYVHLKPVLMYG--KESLSFEEVATKIISEEMTMKSDESTSS 131


>IMGA|Medtr4g110620.1 polyprotein-like, related
           chr04_pseudomolecule_IMGAG_V3 25158785-25159321 H
           EGN_Mt090430 20090702
          Length = 178

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 1/127 (0%)

Query: 77  KLEELYASKSGNNQLFYLTKLMNFKYQEGTSVADHLSEMQATIHQLSNMGIKFDDKILGL 136
           KLE LY +K  +NQLF   K  N    EGT + +HL  +   I +L ++ +K  D+   L
Sbjct: 41  KLEGLYQAKKISNQLFPKEKFHNLHMDEGTKIFNHLCTLNDIIFELESIKVKIYDEDKAL 100

Query: 137 MVLASLPESWETLKISITNSTPHSGVSWKFVKNAVLNEEMRRKAHNRSSSQSDILLADAK 196
            ++ SLP  +  LK+ +              K  +++EE RR   + S+S S +LL  + 
Sbjct: 101 SLILSLPPFYVHLKLVLMYGKESLSFEEVATKIKIISEE-RRMKSDESTSSSLMLLTKSG 159

Query: 197 RNNHPRG 203
            N    G
Sbjct: 160 ANGKRIG 166