Jatropha Genome Database

JcCA0274731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0274731.10 - phase: 1 /partial
         (143 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g087340.1 C2 chr01_pseudomolecule_IMGAG_V3 17576911-1...   117   2e-27
IMGA|Medtr1g065790.1 C2 chr01_pseudomolecule_IMGAG_V3 13214233-1...    95   1e-20
IMGA|Medtr1g093800.1 C2 chr01_pseudomolecule_IMGAG_V3 19204628-1...    56   6e-09

>IMGA|Medtr1g087340.1 C2 chr01_pseudomolecule_IMGAG_V3
           17576911-17578959 E EGN_Mt090430 20090702
          Length = 682

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 9/115 (7%)

Query: 7   PSILTESELGPSPSEVVAAMIKNKLRIEEMESEIIGSWSLESSMEGLHSKLERWQIEASS 66
           P I+TESELGPSPSEV AAM +  + I+E E+  +G WSL+ S+EGL SKLERW+ E   
Sbjct: 546 PVIMTESELGPSPSEVAAAMARKPI-IDE-ENSTVGGWSLDESVEGLQSKLERWRTELPP 603

Query: 67  VYDHSDISSLIRSSVVSGGSGPYMHHRRHSEG--DGGVFSCFGSVCGVQCSIVCG 119
           V DH ++SS   +S  +       H RRH+EG    G+FSCF ++CGV+CS+VCG
Sbjct: 604 VIDHGELSSFPTTSSKTS-----RHSRRHTEGGSGNGLFSCFSNICGVECSVVCG 653


>IMGA|Medtr1g065790.1 C2 chr01_pseudomolecule_IMGAG_V3
           13214233-13212481 E EGN_Mt090430 20090702
          Length = 459

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 85/141 (60%), Gaps = 14/141 (9%)

Query: 9   ILTESELGPSPSEVVAAMIKNKLRIEEMESEIIGSWSLESSMEGLHSKLERWQIEASSVY 68
           I+T+SELGPS SEV  A+ +  + ++E ES I+  WSL  S+E L  K+ERWQ + + V+
Sbjct: 327 IITDSELGPSASEVAEAVARQPV-MDEGESSIVTGWSLNESVEDLQPKIERWQTDLAPVH 385

Query: 69  DHSDISSLIRSSVVSGGSGPYMHHRRHS------EGDGGVFSCFGSVCGVQCSIVCGRSS 122
           D  ++SS   +S          H RR +       GD G+FSCF  +CG++CSIVCG   
Sbjct: 386 DGREMSSKPTTSSKKKDK----HSRRRTNGGGGDGGDNGLFSCFSVICGLECSIVCG-GD 440

Query: 123 AKKRNRSGKRRNPSVDGLSFL 143
            KK+NR   RRN S+D  SF+
Sbjct: 441 KKKKNR--LRRNQSMDSASFV 459


>IMGA|Medtr1g093800.1 C2 chr01_pseudomolecule_IMGAG_V3
           19204628-19205778 E EGN_Mt090430 20090702
          Length = 375

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 14/132 (10%)

Query: 13  SELGPSPSEVVAAMIKNKLRI------EEMESEIIGSWSLESSM--EGLHSKLERW-QIE 63
           S++GPSPS V AA+ K    +      + + + +   W  E     E L++K++RW QI+
Sbjct: 234 SDVGPSPSVVAAAIAKGLYPLPLHVPRKTVNNSMFEKWPPEKDNGGEMLNTKMDRWRQID 293

Query: 64  ASSVYDH--SDISSLIRSSVVSGGSGPYMHHRRHSEGDGGVFSCFGSVCGVQCSIVCGRS 121
              VYDH  ++ +  ++ +           +RR      G+FSCFG+  G + SI CG  
Sbjct: 294 IPQVYDHLGNNNNGSVKKTGKQTKGKGKGKNRRQG---SGLFSCFGTALGCEISITCGGG 350

Query: 122 SAKKRNRSGKRR 133
           + KK   + K R
Sbjct: 351 NHKKSGSTNKPR 362