Jatropha Genome Database

JcCA0274511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0274511.20 - phase: 0 
         (170 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g139680.1 Protein of unknown function DUF1068 chr07_p...    96   7e-21

>IMGA|Medtr7g139680.1 Protein of unknown function DUF1068
           chr07_pseudomolecule_IMGAG_V3 33475347-33473815 H
           EGN_Mt090430 20090702
          Length = 164

 Score = 96.3 bits (238), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 80/153 (52%), Gaps = 2/153 (1%)

Query: 11  CSNGALKIVLALVATFLIGYVVRPQLHSRESSSAQASCPCDCDCSEEFALFLPLDCSNDD 70
           CS G LK VL  ++   I + + P    R   S    C   C CS        LDC   D
Sbjct: 12  CSYGVLKWVLVWMSVCYIVFTIGPPSRWRFKQSPCPQCH-HCYCSSVEYPLGSLDCGKHD 70

Query: 71  PDIHEEMEKDIVALLSEEIALQRRVANDSLEHTRALVMDARKASLHYQKEAEKCNXXXXX 130
           P + EEM KD +++LSEE+ LQ+ VAN++LE T+ LV++AR    HY+KE EKC+     
Sbjct: 71  PAM-EEMNKDPLSMLSEELKLQKIVANETLEQTKRLVINARNTFSHYKKEVEKCSIGMET 129

Query: 131 XXXXXXXXXXXXXXXYKLTAEWEKRARELGWEE 163
                           +LTA WE+RAR+ GW++
Sbjct: 130 CEEARERAEAELVEERRLTALWEERARDYGWKD 162