Jatropha Genome Database

JcCA0273941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0273941.10 - phase: 0 /partial
         (191 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g031030.1 Eukaryotic translation initiation factor 4E...   297   3e-81
IMGA|Medtr2g021870.1 Eukaryotic translation initiation factor 4E...   118   2e-27
IMGA|Medtr1g065250.1 Eukaryotic translation initiation factor 4E...   107   4e-24

>IMGA|Medtr6g031030.1 Eukaryotic translation initiation factor 4E
           (eIF-4E) chr06_pseudomolecule_IMGAG_V3 7020634-7025387 E
           EGN_Mt090430 20090702
          Length = 226

 Score =  297 bits (760), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 140/153 (91%), Positives = 145/153 (94%), Gaps = 1/153 (0%)

Query: 30  KEAEERQARDLKAGLHPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIVEFSTVEGFWVCYC 89
           KE EERQ+R+LKAGLHPLK KFVFWYTRR PG+R Q SYEDNIKKIVEFSTVEGFWVCYC
Sbjct: 33  KETEERQSRELKAGLHPLKSKFVFWYTRRVPGIRNQ-SYEDNIKKIVEFSTVEGFWVCYC 91

Query: 90  HLARPSSLPSPTDLHLFKEGIRPLWEDSANSNGGKWIIRFKKVVSGRYWEDLVLALVGDQ 149
           HLARPSSLP PTDLHLFKEGIRPLWEDSAN NGGKWIIRFKK VSGR+WEDLVLALVGDQ
Sbjct: 92  HLARPSSLPIPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKAVSGRFWEDLVLALVGDQ 151

Query: 150 LDYGDNICGAVLSIRFNEDILSVWNRNASDHQA 182
           LDYGDNICGAVLSIRFNEDI+SVWNRNASDHQA
Sbjct: 152 LDYGDNICGAVLSIRFNEDIVSVWNRNASDHQA 184


>IMGA|Medtr2g021870.1 Eukaryotic translation initiation factor 4E
           (eIF-4E) chr02_pseudomolecule_IMGAG_V3 5706522-5709788 F
           EGN_Mt090430 20090702
          Length = 225

 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query: 37  ARDLKAG--LHPLKHKFVFWYTRRTPGVRT-QTSYEDNIKKIVEFSTVEGFWVCYCHLAR 93
           ++ L AG   HPL++ + FW+    P  ++ Q ++  +I+ +  FSTVE FW  Y ++  
Sbjct: 40  SKPLTAGHQSHPLENSWTFWFDN--PQTKSKQQAWGSSIRPVYTFSTVEEFWSIYNNIHH 97

Query: 94  PSSLPSPTDLHLFKEGIRPLWEDSANSNGGKWIIRFKKVVSGRYWEDLVLALVGDQLDYG 153
           PS L    D H FK  I P WED   +NGGKW ++F +  S   W   +LA++G+Q D+G
Sbjct: 98  PSKLAIGADFHCFKHKIEPKWEDPICANGGKWTVQFSRGKSDTSWLYTLLAMIGEQFDHG 157

Query: 154 DNICGAVLSIRFNEDILSVWNRNASDHQA 182
           D ICGAV+++R   + +S+W +NA++  A
Sbjct: 158 DEICGAVVNVRSRAEKISIWTKNAANEAA 186


>IMGA|Medtr1g065250.1 Eukaryotic translation initiation factor 4E
           (eIF-4E) chr01_pseudomolecule_IMGAG_V3 12901054-12904642
           F EGN_Mt090430 20090702
          Length = 205

 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 2/137 (1%)

Query: 45  HPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIVEFSTVEGFWVCYCHLARPSSLPSPTDLH 104
           H L+ ++ FWY  ++   +   ++   ++K+  F TVE FW  +  + +PS LPS  D H
Sbjct: 31  HKLERRWTFWYDNQSK-PKQGAAWGSTLRKVYSFDTVEEFWCLHDQIFKPSKLPSNADFH 89

Query: 105 LFKEGIRPLWEDSANSNGGKWIIRFK-KVVSGRYWEDLVLALVGDQLDYGDNICGAVLSI 163
           LFK+GI P WED   +NGGKW +  K K      W + ++AL+G+Q    ++ICG V+S+
Sbjct: 90  LFKDGIEPKWEDPECANGGKWTLTSKSKGNLDTMWLETLMALIGEQFGDTEDICGVVVSV 149

Query: 164 RFNEDILSVWNRNASDH 180
           R  +D LS+W + A++ 
Sbjct: 150 RQWQDKLSLWTKTAANE 166