Jatropha Genome Database

JcCA0272091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0272091.10 + phase: 0 /partial
         (423 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g095840.1 UBA-like chr05_pseudomolecule_IMGAG_V3 3802...   397   e-111
IMGA|Medtr8g044600.1 Ubiquitin-associated chr08_pseudomolecule_I...   370   e-103

>IMGA|Medtr5g095840.1 UBA-like chr05_pseudomolecule_IMGAG_V3
           38029706-38024797 E EGN_Mt090430 20090702
          Length = 669

 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/427 (53%), Positives = 281/427 (65%), Gaps = 30/427 (7%)

Query: 24  KASDKSSGSTNTASGTPASAYNPISGTFHTLEIPSATSSPHFHDNGRFRNIDDTDEHSSS 83
           KAS KS+GS +  +G PASAYNP+ GTFHTL+  +  S+   H NGRFRNID+TDEH  S
Sbjct: 26  KASVKSTGSGSATAGIPASAYNPLLGTFHTLDTSAIPSTSPMHSNGRFRNIDETDEHPGS 85

Query: 84  PHGTVSEYDSVSNNGSCSGESEDPKDKTTSS-TRQETVPGLENDRREKIRLKNEKKHQRQ 142
                 EYDSVSNNGS SGESE+ K+KT++   + E VPG +ND+REKIR KNE+KHQRQ
Sbjct: 86  LVVAGVEYDSVSNNGSWSGESEEHKEKTSNPPVKPEVVPGADNDKREKIRQKNERKHQRQ 145

Query: 143 KERRAQELHERCSGYLMSRKLEALSEQLVAMGFSHERATLALVLNEGRVEESVNWLFEGN 202
           KERRAQEL ERC  YLMSRKLE L++Q VAMGFSHERAT+ALVLNEGRVEESV WLFE  
Sbjct: 146 KERRAQELRERCRSYLMSRKLETLAQQFVAMGFSHERATMALVLNEGRVEESVAWLFESG 205

Query: 203 EEEARNKDSKLGTSSNLKIDISEELAQISVLEVRYKCSKQEVERAIVACEGDLLKAEEIL 262
           +E     D   G  S LKIDISEELA+I+ +E+RY CSKQEVER IV+CEGDL KA EIL
Sbjct: 206 DEADGQNDKTTGKGS-LKIDISEELARIADMEIRYGCSKQEVERVIVSCEGDLEKAAEIL 264

Query: 263 QAQKLEQPATPLTSEEVTDA---NDLK---------RTHEKPLSSSITIQQRRNEQDFNY 310
           +  K + P+ P   EE  D    N+ K         R+  KP+ S    Q R +E+DFNY
Sbjct: 265 RESKHDPPSAPPKPEETGDPPIINNGKQSGVSGLNPRSQTKPVPS--LSQLRIDEKDFNY 322

Query: 311 AKTSIALPMYSEPGNRSLQPLN------------QSRSLADKRWTATGTSPSFSLGMASP 358
            K +I   + SE  ++++QPL             Q+  L+DKRW   G++PS S  +ASP
Sbjct: 323 TKAAITNGVSSESSSKNIQPLKRMLPKSEWVKPQQATILSDKRWPGAGSNPSVSYSLASP 382

Query: 359 GQVTPQSAKLEVRLGVSGNEGKNHQ-HILREPIVMMQRRQSINAKQ-NQVPSISASPSVT 416
            QV P  AK E R    G + KN Q    +EPIV+MQR Q++NAKQ     + S+ P ++
Sbjct: 383 LQVAPPPAKTEARYVSVGGDYKNLQPGAAKEPIVVMQRPQTLNAKQVPASSNSSSPPGMS 442

Query: 417 AGWYSNN 423
           A WY  N
Sbjct: 443 ASWYPTN 449


>IMGA|Medtr8g044600.1 Ubiquitin-associated
           chr08_pseudomolecule_IMGAG_V3 10056327-10059243 F
           EGN_Mt090430 20090702
          Length = 624

 Score =  370 bits (949), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/410 (52%), Positives = 271/410 (66%), Gaps = 25/410 (6%)

Query: 22  EQKASDKSSGSTNTASGTPASAYNPISGTFHTLEIPSATSSPHFHDNGRFRNIDDTDEHS 81
           +QK S K+SGSTN  S  P+SA +        LE     SS   +DN +F  I++TD+HS
Sbjct: 19  QQKTSPKTSGSTNDESSIPSSACD--------LETSLVDSSSIVNDNSQFAKINETDDHS 70

Query: 82  SSPHGTVSEYDSVSNNGSCSGESEDPKDKTT-SSTRQETVPGLENDRREKIRLKNEKKHQ 140
            SP GTVSEYDSVSNNGSCSGESED K+K   SSTR E +PG +NDRR+KIRLKNE+KHQ
Sbjct: 71  ISPQGTVSEYDSVSNNGSCSGESEDTKEKAANSSTRLEFIPGCDNDRRDKIRLKNERKHQ 130

Query: 141 RQKERRAQELHERCSGYLMSRKLEALSEQLVAMGFSHERATLALVLNEGRVEESVNWLFE 200
           RQ+ERRA ELHERC  YLMSRKLE L ++LVAMGF+ ERATLAL LN G++EES++WLFE
Sbjct: 131 RQRERRAHELHERCVAYLMSRKLEKLVQKLVAMGFTTERATLALKLNNGKLEESISWLFE 190

Query: 201 GNEEEARNKD-SKLGTSSNLKIDISEELAQISVLEVRYKCSKQEVERAIVACEGDLLKAE 259
           G  E    KD + L +  NLKIDISE L QI  LEV+Y CSKQEVERA+VACEGDL KAE
Sbjct: 191 GGSEA---KDTTNLVSDGNLKIDISEALEQIYALEVKYNCSKQEVERAVVACEGDLQKAE 247

Query: 260 EILQAQKLEQPATPLTSEEVTDANDLKRTHE-KPLSSSITIQQRRNEQDFNYAKTSIALP 318
             L++QK E+     + +   + N   R+H  +P  +S++IQQR NE DFNY     A  
Sbjct: 248 NTLKSQK-EESHVNQSEDSAQNNNSSIRSHGLQP--ASVSIQQRGNESDFNYYNVRGADS 304

Query: 319 MYSEPGNRSLQP--LNQSRSLADKRW--TATGTSPSFSLGMASPGQVTPQSAKLEVRLGV 374
           M+ +P NR+ Q   LN    L  KRW   AT ++PS    M    Q      K+EV+   
Sbjct: 305 MFHDPENRNPQSLHLNHQNELTQKRWGVGATASNPS---NMLQSMQAMSPYVKMEVQPSA 361

Query: 375 SGNEGKN-HQHILREPIVMMQRRQSINAKQNQVPSISASPSVTAGWYSNN 423
             N+G+  HQ + REP+VMMQ  Q  +AKQN + S+++  S T+ WY NN
Sbjct: 362 FRNDGRMIHQGVGREPVVMMQHPQFADAKQNYLNSMNSIASGTSSWYVNN 411