Jatropha Genome Database

JcCA0271581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0271581.10 + phase: 0 /partial
         (250 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g124940.1 Cyclin-like F-box chr04_pseudomolecule_IMGA...   405   e-113
IMGA|Medtr7g096650.1 Cyclin-like F-box chr07_pseudomolecule_IMGA...   258   2e-69
IMGA|Medtr5g074580.1 Leucine-rich repeat 2 chr05_pseudomolecule_...   222   1e-58
IMGA|Medtr3g148840.1 Protein AUXIN SIGNALING F-BOX 3, related ch...   211   4e-55
IMGA|Medtr3g093160.1 Leucine-rich repeat, cysteine-containing su...    84   4e-17
IMGA|Medtr5g089200.1 Leucine-rich repeat 2 chr05_pseudomolecule_...    84   5e-17
IMGA|Medtr8g074230.1 Leucine-rich repeat, cysteine-containing su...    82   3e-16

>IMGA|Medtr4g124940.1 Cyclin-like F-box
           chr04_pseudomolecule_IMGAG_V3 29352485-29348732 F
           EGN_Mt090430 20090702
          Length = 586

 Score =  405 bits (1040), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/248 (77%), Positives = 219/248 (88%)

Query: 3   NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVL 62
           NLTELDIQENG+DDKSG+WLSCFPE+F+SLEILNFANL+++VNFDALE+LV RC SLK L
Sbjct: 172 NLTELDIQENGVDDKSGNWLSCFPESFTSLEILNFANLSNDVNFDALEKLVARCNSLKTL 231

Query: 63  KVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEA 122
           KVNK+++L+QLQRLLV APQL ELGTGSFSQEL+ QQY++LE AF++C++L TLSGLW A
Sbjct: 232 KVNKSVTLEQLQRLLVRAPQLCELGTGSFSQELTGQQYSELERAFNNCRSLHTLSGLWVA 291

Query: 123 MALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGSH 182
            A Y  VLYP CTNLTFLN SYA L S  L  LL  CP LRRLWVLDTVEDKGLEAVGS+
Sbjct: 292 SAQYHQVLYPVCTNLTFLNFSYAPLDSEGLSKLLVRCPNLRRLWVLDTVEDKGLEAVGSY 351

Query: 183 CPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQNC 242
           CPLLEELRVFP DPF+E   HGVTE+GF+AVS GCR+LHYVLYFCRQMTNAAVAT+V+NC
Sbjct: 352 CPLLEELRVFPGDPFEEGAAHGVTESGFIAVSEGCRKLHYVLYFCRQMTNAAVATVVENC 411

Query: 243 PNFTHFRL 250
           P+FTHFRL
Sbjct: 412 PDFTHFRL 419


>IMGA|Medtr7g096650.1 Cyclin-like F-box
           chr07_pseudomolecule_IMGAG_V3 21663069-21659617 E
           EGN_Mt090430 20090702
          Length = 571

 Score =  258 bits (660), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/249 (50%), Positives = 169/249 (67%), Gaps = 3/249 (1%)

Query: 3   NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVL 62
           +L ELD+QEN ++D  G WLSCFPE+ +SL  LNFA L  ++N  ALERLV+R  +LK L
Sbjct: 152 SLRELDLQENEVEDHKGQWLSCFPESCTSLVSLNFACLKGDINLGALERLVSRSPNLKSL 211

Query: 63  KVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEA 122
           ++N+++ +D LQR+L  APQL +LG GSF  +L++  Y   +     CK++ +LSG  E 
Sbjct: 212 RLNRSVPVDALQRILTRAPQLMDLGIGSFFHDLNSDAYAMFKATILKCKSITSLSGFLEV 271

Query: 123 MALYLPVLYPACTNLTFLNLSYAA-LQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGS 181
               L  +YP C NLT LNLSYAA +  +EL  L+RHC +L+RLW++D + D GL  V S
Sbjct: 272 APFSLAAIYPICQNLTSLNLSYAAGILGIELIKLIRHCGKLQRLWIMDRIGDLGLGVVAS 331

Query: 182 HCPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQN 241
            C  L+ELRVFP+ PF  +    VTE G VA+S GC +LH +LYFC QMTNAA+  + +N
Sbjct: 332 TCKELQELRVFPSAPFGNQ--AAVTEKGLVAISMGCPKLHSLLYFCHQMTNAALIAVAKN 389

Query: 242 CPNFTHFRL 250
           CPNF  FRL
Sbjct: 390 CPNFIRFRL 398


>IMGA|Medtr5g074580.1 Leucine-rich repeat 2
           chr05_pseudomolecule_IMGAG_V3 26963413-26966403 E
           EGN_Mt090430 20090702
          Length = 617

 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 119/251 (47%), Positives = 165/251 (65%), Gaps = 5/251 (1%)

Query: 4   LTELDIQENGID---DKSGSWLSCFP-ENFSSLEILNFANLNSEVNFDALERLVTRCKSL 59
           L  L++ E+ ID   D+   W+SCFP E  + LE L F  +   VNF+ALERLV R  +L
Sbjct: 200 LRVLELVESVIDAENDEEVDWVSCFPIEGQTHLESLAFDCVECPVNFEALERLVARSPNL 259

Query: 60  KVLKVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGL 119
           K L++N+++S+ QL RL++ APQLT LGTGSF    +  Q  D  +AF+ C++L  LSG 
Sbjct: 260 KKLRLNRSVSMVQLHRLMLRAPQLTHLGTGSFCANENVDQEPDYASAFAACRSLVCLSGF 319

Query: 120 WEAMALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAV 179
            E    YLP ++P C NLT LN SYA + + +L +++ HC +L+ LWVLD++ D+GL+AV
Sbjct: 320 REIWPDYLPAIFPVCANLTSLNFSYADVNAEQLKSVICHCHKLQILWVLDSICDEGLQAV 379

Query: 180 GSHCPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIV 239
            + C  L ELRVFP D   EE    V+E GF A+S GCR+L  +L+FC+ MTNAAV  + 
Sbjct: 380 AATCKDLRELRVFPVDA-REETEGPVSEVGFEAISQGCRKLESILFFCQTMTNAAVIAMS 438

Query: 240 QNCPNFTHFRL 250
           +NCP+   FRL
Sbjct: 439 KNCPDLVVFRL 449


>IMGA|Medtr3g148840.1 Protein AUXIN SIGNALING F-BOX 3, related
           chr03_pseudomolecule_IMGAG_V3 38779268-38775322 E
           EGN_Mt090430 20090702
          Length = 594

 Score =  211 bits (536), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 115/259 (44%), Positives = 158/259 (61%), Gaps = 14/259 (5%)

Query: 4   LTELDIQENGID----DKSG--SWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCK 57
           L  LD++E+ +D    D  G   W+SCFPE  + LE L F  ++S +NF++LERLV R  
Sbjct: 170 LRVLDLEESMVDVNVSDYDGILDWISCFPEGETHLESLGFDCVDSPINFESLERLVARSP 229

Query: 58  SLKVLKVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTD-----LENAFSHCKN 112
           SLK L++N++I L QL RL+  AP LT LGTGSF     T           E  F+  K+
Sbjct: 230 SLKRLRLNRHIKLSQLYRLMYKAPHLTHLGTGSFVVPEDTMNVVGDDELIYETPFAASKS 289

Query: 113 LDTLSGLWEAMALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVE 172
           L +LSG  + +  YLP +YP C NLT LN SYA + + ++ +++  C +L+ LWVLD + 
Sbjct: 290 LVSLSGFRDTLPEYLPAIYPVCANLTSLNFSYADIDTDQIKSIVSRCHKLQTLWVLDAIF 349

Query: 173 DKGLEAVGSHCPLLEELRVFPADPFDEEIIHG-VTEAGFVAVSYGCRRLHYVLYFCRQMT 231
           D+GL+ V   C  L ELRVFP      E + G V+E GF A+S GCR+L  +L+FC +MT
Sbjct: 350 DEGLQVVAETCKDLRELRVFPLHA--REGVEGPVSEVGFEAISQGCRKLQSILFFCTRMT 407

Query: 232 NAAVATIVQNCPNFTHFRL 250
           NAAV  +  NCP+   FRL
Sbjct: 408 NAAVVAMSHNCPDLVVFRL 426


>IMGA|Medtr3g093160.1 Leucine-rich repeat, cysteine-containing
           subtype chr03_pseudomolecule_IMGAG_V3 22073407-22070105
           E EGN_Mt090430 20090702
          Length = 601

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 107/234 (45%), Gaps = 14/234 (5%)

Query: 21  WLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVLKVNKNISLDQLQRLLVGA 80
           WL     N + LE LNF   + EV    LE L   C +L  +K+     LD L+     A
Sbjct: 189 WLHELAMNNTVLESLNFYLTDVEVKVQDLELLARNCPNLVSVKITDCEILD-LRNFFRNA 247

Query: 81  PQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEAMALYLPVLYPACTNLTFL 140
             L E   G++++E   ++YT L      C+   T  G  E     LP+ +P    L  L
Sbjct: 248 TALEEFSGGTYNEE--PERYTALMLPAKLCRLGLTYIGKNE-----LPIAFPYAAGLKKL 300

Query: 141 NLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGSHCPLLEELRVFPADP---- 196
           +L YA L + +   L++ CP L  L   + + D+GL  +G  C  L+ LR+   D     
Sbjct: 301 DLLYAMLDTEDHCMLIQKCPNLEVLETRNVIGDRGLVILGHCCKKLKRLRIERGDDDQGL 360

Query: 197 FDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRL 250
            DEE    V+  G +A+S GC  L Y+  +   +TNA++  I  +      FRL
Sbjct: 361 EDEE--GTVSHRGLIALSQGCTELEYLAVYVSDITNASLEHIGTHLKKLCDFRL 412


>IMGA|Medtr5g089200.1 Leucine-rich repeat 2
           chr05_pseudomolecule_IMGAG_V3 34621888-34616774 E
           EGN_Mt090430 20090702
          Length = 587

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 11/251 (4%)

Query: 3   NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLN-SEVNFDALERLVTRCKSLKV 61
           NL  L ++E+ + +  G WL     N + LE LNF   + + +  + LE L   C +L  
Sbjct: 154 NLRVLFMEESSVLENDGKWLHELASNNTVLETLNFYLTDIANIRIEDLELLAKNCPNLVS 213

Query: 62  LKVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWE 121
           +K+  +  +  L      A  L E   GS++++        L +  S         GL  
Sbjct: 214 VKIT-DCEMLNLVNFFRYASSLEEFCGGSYNEDPEKYAAISLPSKLSRL-------GLTY 265

Query: 122 AMALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGS 181
                +P+ +P  + L  L+L YA L + +   L+  CP L  L   + + D+GLE +  
Sbjct: 266 IGKNEMPIAFPYASQLKKLDLLYAMLDTEDHCTLIEKCPNLEILESRNVIGDRGLEVLAR 325

Query: 182 HCPLLEELRVFPADPFD--EEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIV 239
            C  L+ LR+   D     E++   V++ G +A+S GC  L Y+  +   +TN ++  I 
Sbjct: 326 CCKKLKRLRIERGDDDQGMEDVDGVVSQRGLIALSLGCPELEYMAVYVSDITNESLEHIS 385

Query: 240 QNCPNFTHFRL 250
            +  N   FRL
Sbjct: 386 THLKNLCDFRL 396


>IMGA|Medtr8g074230.1 Leucine-rich repeat, cysteine-containing
           subtype chr08_pseudomolecule_IMGAG_V3 14712347-14710032
           H EGN_Mt090430 20090702
          Length = 557

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 114/253 (45%), Gaps = 18/253 (7%)

Query: 2   VNLTELDIQENGIDDK---SGSWLSCFPENFSSLEILNFANLN-----SEVNFDALERLV 53
            NL  L ++E+ + +K    G WL     N  +L  LNF   +     S++N + LE L 
Sbjct: 157 TNLRVLFMEESSVSEKENEDGKWLHELALNNKALVTLNFFKTDLFLNESKINIEDLELLA 216

Query: 54  TRCKSLKVLKVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNL 113
             C +L  +K+     LD L+     A  L E   G +++        D EN  +     
Sbjct: 217 KNCPNLASVKITDCEILD-LKNFFQYASSLEEFCGGFYNK--------DPENYAAVLPAR 267

Query: 114 DTLSGLWEAMALYLPVLYPA-CTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVE 172
            +  GL E     LP+++P+    L  L+L Y+ L   +   L+R CP L  L  +D + 
Sbjct: 268 LSRLGLVEIRKDDLPIMFPSLVAQLKMLDLRYSTLDMEDHCTLIRLCPNLETLKSMDVIG 327

Query: 173 DKGLEAVGSHCPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTN 232
           +KGL  +G +C  L+ LR+   +   E+    VT+ G + +S GC  L Y+      +TN
Sbjct: 328 NKGLIELGQYCTKLKRLRIETENERREDEEARVTQRGLIEISNGCPELEYISVNVSNITN 387

Query: 233 AAVATIVQNCPNF 245
            A+  I  +  N 
Sbjct: 388 QALIHISTHLKNL 400