Jatropha Genome Database

JcCA0271351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0271351.10 + phase: 0 /partial
         (180 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g125310.1 Peptidase S1 and S6, chymotrypsin/Hap chr08...   108   2e-24

>IMGA|Medtr8g125310.1 Peptidase S1 and S6, chymotrypsin/Hap
           chr08_pseudomolecule_IMGAG_V3 29192313-29198236 E
           EGN_Mt090430 20090702
          Length = 590

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 90/147 (61%), Gaps = 4/147 (2%)

Query: 1   VPYYADGGQPSYLIIAGLVFTPLSEPLIDAE-GED---SMGLKLLAKARYSLSRFKGEQI 56
           +P ++ G  PSY IIAG VF+ +S P + +E G+D      +K+L K  Y++ +   EQ+
Sbjct: 442 IPAHSKGKPPSYYIIAGFVFSTVSVPYLRSEYGKDYEYEAPVKILDKLLYAMPQSPDEQL 501

Query: 57  VILSQVLSNEVNIGYEDMSNQQVLKYNGTRVKNIHHLAYLVDSCKERYLVFEFDDNYVAV 116
           V++SQVL  ++NIGYE++ N QV+ +NG  VKN+  LA +V+SC + YL F+ D   + V
Sbjct: 502 VVISQVLVADINIGYEEIVNTQVVGFNGKPVKNLKSLAAMVESCDDEYLKFDLDYEQIVV 561

Query: 117 LERQAANAALSSILRDYGIRCERSPDL 143
           L  + A AA   IL  + I    S DL
Sbjct: 562 LRTKTAKAATLDILATHCIPSAMSDDL 588