Jatropha Genome Database
- JcCA0271341.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0271341.20 - phase: 2 /TE/partial
(617 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 201 1e-51
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 195 6e-50
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 193 2e-49
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 190 2e-48
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 184 1e-46
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 177 2e-44
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 159 3e-39
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 104 1e-22
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 103 2e-22
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 98 1e-20
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 88 1e-17
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 83 3e-16
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 69 5e-12
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 69 9e-12
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 65 1e-10
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 63 5e-10
IMGA|Medtr3g162300.1 retrotransposon like protein, putative chr0... 60 5e-09
IMGA|Medtr1g102700.1 hypothetical protein chr01_pseudomolecule_I... 59 8e-09
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 56 5e-08
IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA po... 55 8e-08
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 143/218 (65%), Gaps = 1/218 (0%)
Query: 338 ILSCEVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQA-GVWKIVDLGQY 396
L EVA S GI + Q+KY LDLL ++ +G K + +P + + +L G D+ Y
Sbjct: 1095 FLGLEVAHSQLGISLCQKKYCLDLLADSGTIGSKPASTPSDPSLKLHKDGALPYEDIPSY 1154
Query: 397 QRLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHG 456
+RL+GRL+YL+ TRPDI Y +SQ++ P +H A R+L YLK+ P +G+ F ++
Sbjct: 1155 RRLIGRLLYLNTTRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNS 1214
Query: 457 HLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGV 516
L+++ Y+DADWAG LD RRS SG C F+G +L++WR+KKQ V+RSS+EAEYR++A
Sbjct: 1215 PLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEYRALASAT 1274
Query: 517 SEMLWVRKLIEDLKYSNSGTSILLCDNKAAISIAQNLV 554
E+ W+ L++DL + + +L CDN++A+ IA N V
Sbjct: 1275 CELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPV 1312
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 198 TPIKISLSCAVNLNWELHQFDVKNAFLHGDLEDDVYMDVPP 238
T +++ ++ A +W LHQ DV NAFLHGDL+++VYM +PP
Sbjct: 955 TTVRLIIALASINHWHLHQLDVNNAFLHGDLQENVYMTLPP 995
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 195 bits (495), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 140/218 (64%), Gaps = 1/218 (0%)
Query: 338 ILSCEVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQA-GVWKIVDLGQY 396
L EVA S++GI + QRKY LDLL + L K + +P + + +L A G D+ Y
Sbjct: 1112 FLGLEVAHSSQGISLCQRKYCLDLLTDIGFLAAKPASTPSDPSCKLHADGGPPFSDIPSY 1171
Query: 397 QRLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHG 456
+RL+GRLIYL++TRP I +A +SQ+++ P + H A RIL YLK +P +G+ F +
Sbjct: 1172 RRLIGRLIYLTNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDS 1231
Query: 457 HLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGV 516
L + Y+DADWAG LD RRS SG C F+G +L++W++KKQ V+RSS+EAEYR++
Sbjct: 1232 SLFLSGYSDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAAT 1291
Query: 517 SEMLWVRKLIEDLKYSNSGTSILLCDNKAAISIAQNLV 554
E+ W+ L+ DL + +L CDN++A+ IA N V
Sbjct: 1292 CELQWLLYLLHDLHVTTVKLHVLYCDNQSALHIAANPV 1329
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 198 TPIKISLSCAVNLNWELHQFDVKNAFLHGDLEDDVYMDVP 237
T ++ ++ A NW +HQ DV NAFLHGDL++DVYM VP
Sbjct: 972 TTVRTIIALAYMNNWHIHQLDVNNAFLHGDLQEDVYMIVP 1011
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 139/218 (63%), Gaps = 1/218 (0%)
Query: 338 ILSCEVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQAGVWKIVD-LGQY 396
L EVA S GI + QRKY LDLL ++ +G K +P + + +L D + Y
Sbjct: 967 FLGIEVAHSKLGISLYQRKYCLDLLHDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIPAY 1026
Query: 397 QRLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHG 456
+RLVGRL+YL++TRPDI + +SQ++ P +H A R L YLKS P +G+ F ++
Sbjct: 1027 RRLVGRLLYLNNTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNS 1086
Query: 457 HLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGV 516
L ++ ++DADWAG LD R+S +G C F+G +L++WR+KKQ V+RSS+EAEYR++A
Sbjct: 1087 SLTLQGFSDADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASAT 1146
Query: 517 SEMLWVRKLIEDLKYSNSGTSILLCDNKAAISIAQNLV 554
E+ W+ L+ DL + S +L CDN++A+ IA N V
Sbjct: 1147 CEIQWLLYLLNDLHITCSKPPVLYCDNQSALHIAANPV 1184
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 19/132 (14%)
Query: 122 SRSKMEEMKALAKSGTWDLA--ASXVEK-------KNQWDVSGCLQXSTRRMAQLNSTRL 172
+++ E+ AL K+GTWD+ + V+ K + + G ++ R A+L +
Sbjct: 752 NKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNADGSIE---RYKARLVAK-- 806
Query: 173 GWWQKDIHKLMVLITKXPLLXLQRXTPIKISLSCAVNLNWELHQFDVKNAFLHGDLEDDV 232
G+ Q I L T P+ L T +++ ++ A NW LHQ DV NAFLHG+L++DV
Sbjct: 807 GYTQ--IEGLDYFETYSPVAKL---TTVRLVIALASIHNWHLHQLDVNNAFLHGELQEDV 861
Query: 233 YMDVPPRFXVSK 244
YM +PP ++K
Sbjct: 862 YMILPPGINIAK 873
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 137/218 (62%), Gaps = 1/218 (0%)
Query: 338 ILSCEVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQA-GVWKIVDLGQY 396
L EVA S GI + QRKY LDLL + LG K +P + + +L D+
Sbjct: 1121 FLGIEVAHSKLGISLCQRKYCLDLLADIGSLGSKPISTPSDSSIKLHLDSSSPFEDVPAC 1180
Query: 397 QRLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHG 456
+RLVGRL+YL++TRPDI + +SQ++ P +H A R+L YLKS P +G+ F +
Sbjct: 1181 RRLVGRLLYLNNTRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSS 1240
Query: 457 HLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGV 516
L ++ ++DADWAG +D RRS SG C F+G +L++WR+KKQ V++SS+EAEYR++A
Sbjct: 1241 SLNLQGFSDADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASAT 1300
Query: 517 SEMLWVRKLIEDLKYSNSGTSILLCDNKAAISIAQNLV 554
E+ W+ L++DL + +L CDN++AI IA N V
Sbjct: 1301 CELQWILYLLKDLHTTCPKLPVLYCDNQSAIHIANNPV 1338
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 17/119 (14%)
Query: 128 EMKALAKSGTWDLAASXVEKKNQWDVSGC-----LQXSTRRMAQLNSTRL---GWWQKDI 179
E++AL K+GTW L V+ GC ++ + RL G+ Q I
Sbjct: 912 ELQALEKTGTWKL----VDLPPNVKPIGCRWIYKVKFHADGTVERYKARLVAKGYNQ--I 965
Query: 180 HKLMVLITKXPLLXLQRXTPIKISLSCAVNLNWELHQFDVKNAFLHGDLEDDVYMDVPP 238
L L T P+ L T +++ ++ + NW LHQ DV NAFLHGDL++DVYM VPP
Sbjct: 966 EGLDYLDTYSPVAKL---TTVRLVIALSSINNWHLHQLDVNNAFLHGDLQEDVYMMVPP 1021
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 137/211 (64%), Gaps = 7/211 (3%)
Query: 338 ILSCEVARSNKGIFISQRKYVLDLLEETCMLGCK----ASDSPIEVNHRLQAGVWKIVDL 393
+L EVA S +GI + QRKY LDLL ++ + K +SD+ +++ H + ++ D+
Sbjct: 52 VLGLEVAHSKQGISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKL-HNDSSPPYE--DI 108
Query: 394 GQYQRLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFS 453
Y+RL+GRL+YL+ TRPDI + +SQ++ P +H A R+L YLK P +G+ F
Sbjct: 109 PSYRRLIGRLLYLNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFP 168
Query: 454 KHGHLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMA 513
++ L ++ ++D DWAG +D RRS SG C F+G +L++WR+KKQ V+RSS+EAEYR++A
Sbjct: 169 RNSSLHLQGFSDVDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALA 228
Query: 514 LGVSEMLWVRKLIEDLKYSNSGTSILLCDNK 544
E+ W+ L++DL +S +L CDN+
Sbjct: 229 SATCELQWILYLLKDLNIQSSKLPVLFCDNQ 259
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 134/218 (61%), Gaps = 15/218 (6%)
Query: 338 ILSCEVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQAGVWKIV-DLGQY 396
L E+AR G+F+ QRKY LD+L+E ML CK S P+E N +L D +Y
Sbjct: 42 FLGLELARGANGLFMCQRKYTLDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSRY 101
Query: 397 QRLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHG 456
+RL+ RLIYL+ P+I Y++ +++ R+L YLKS+P +GI+ K
Sbjct: 102 RRLISRLIYLTIMHPEITYSVHILT--------------MRVLRYLKSSPGQGIILPKEN 147
Query: 457 HLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGV 516
L++ AY D+DWA RRSTSGY +G ++W++KKQ+ V++SS+EAEYR+M V
Sbjct: 148 DLQLVAYCDSDWASCPLTRRSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAV 207
Query: 517 SEMLWVRKLIEDLKYSNSGTSILLCDNKAAISIAQNLV 554
SE++W+R L+ L+ ++LLCDN+AA+ +A N V
Sbjct: 208 SEVIWLRSLLSSLQVHYDSPTVLLCDNQAAMHLAANPV 245
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 116/185 (62%), Gaps = 1/185 (0%)
Query: 338 ILSCEVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQAGVWKI-VDLGQY 396
L EVA S GI + QRKY LDLL +T +L K +P + + +L + D+ Y
Sbjct: 462 FLGLEVAHSKLGISLCQRKYGLDLLSDTGLLDSKPVATPSDPSIKLYHDDSPLYTDIPAY 521
Query: 397 QRLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHG 456
+RLVGRL+YL+ TRPDI + +SQ++ P +H A R+L YLK+ P +G+ F +
Sbjct: 522 RRLVGRLLYLNATRPDITFITQQLSQFLSKPTQTHYNAALRVLRYLKTCPGKGLHFPRSS 581
Query: 457 HLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGV 516
I+ Y+DADWAG D RRS SG C F+G +L++WR+KKQ V+RSS+EAEYR++
Sbjct: 582 LPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKKQLTVSRSSSEAEYRALGAAT 641
Query: 517 SEMLW 521
S ++
Sbjct: 642 SNPVF 646
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 107/220 (48%), Gaps = 39/220 (17%)
Query: 343 VARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQAGVWKIVD-LGQYQRLVG 401
VA S+KGI + QRKY LDLL + + CK+ +P++ L D + Y+ L+G
Sbjct: 289 VAHSSKGISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPPFDDVLAYRCLIG 348
Query: 402 RLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHGHLKIE 461
L+YL+ TRPDI++A +SQ+M P +H +L YL+ P RG+ F + +++
Sbjct: 349 CLLYLTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRGLFFPRTSEMQLL 408
Query: 462 AYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGVSEMLW 521
++DADW G +D RRS + EA +R + +
Sbjct: 409 GFSDADWGGCVDSRRSLAF------------------------QEAIHRF-------LFF 437
Query: 522 VRKLIEDLKYSNSGT-------SILLCDNKAAISIAQNLV 554
+R I S+ T SIL CDN++A+ IA N V
Sbjct: 438 LRSGISCFSISHPRTPMAHIRLSILYCDNQSALHIAANPV 477
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 4/219 (1%)
Query: 338 ILSCEVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQAGVW-KIVDLGQY 396
I+ E+ R+ KG+ ++Q KY ++ ++ ML +S + N+ + K VD
Sbjct: 316 IICLEILRTTKGLILNQTKYDTEIQKKFNMLDFNSSITLAYANNINEVKEEDKGVDPTIL 375
Query: 397 QRLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHG 456
+RL+G L YL +R DI+Y++ +VS++M P +H A +I+ Y+ + GILF +
Sbjct: 376 RRLIGLLRYLCQSRLDISYSVGIVSKFMSNPLKTHFLAAKKIIRYIHGTLQYGILFPEAQ 435
Query: 457 ---HLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMA 513
L + Y+DADW DRR T+ + + G ++W SKKQ +VA SS E EY +
Sbjct: 436 ETEQLSMIDYSDADWCRDKRDRRRTTSFLFMLQGAPISWSSKKQPIVALSSCEVEYVVGS 495
Query: 514 LGVSEMLWVRKLIEDLKYSNSGTSILLCDNKAAISIAQN 552
+ W++ ++E LL DNK AI++A+N
Sbjct: 496 SAACQANWLQNVLEQSMIKLKQPIKLLIDNKYAINLAKN 534
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 338 ILSCEVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQAGVWKIVDLGQYQ 397
L EV + GI +SQRK+VLDLL+E SP++ N +L++ K++D Y
Sbjct: 564 FLGLEVLYKDDGILVSQRKFVLDLLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLDDPTYY 623
Query: 398 R-LVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFS 453
R L+G+L +L+HTR D+AY + L+SQYM P + HL A F +L YLK P G+ S
Sbjct: 624 RKLIGKLNFLTHTRLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLKKDPTLGVFMS 680
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 198 TPIKISLSCAVNLNWELHQFDVKNAFLHGDLEDDVYMDVPP 238
T ++ + A W +HQ DV NAFLHGDL ++VYMD+PP
Sbjct: 424 TTVRTLIVAAAKKQWNIHQLDVNNAFLHGDLHEEVYMDIPP 464
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 94/191 (49%), Gaps = 33/191 (17%)
Query: 339 LSCEV-ARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRL-QAGVWKIVDLGQY 396
L EV +SN + I+Q KYV DLL +T M K+ SP+ + +L + G D
Sbjct: 41 LGIEVKPQSNGSLLITQSKYVRDLLAKTDMQEAKSLPSPMISDLKLSKDGSTPFSD---- 96
Query: 397 QRLVGRLIYLSHTRPDIAYAISLVSQYMH--GPHDSHLEAVFRILGYLKSAPRRGILFSK 454
P + +I QY + GP + +L +LK G+L
Sbjct: 97 --------------PTLCRSIVRALQYANLIGP-------LSNVLRHLKGTLSWGLLVRP 135
Query: 455 HG--HLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSM 512
L I AY DADW DDR + C F+G NL++W +KKQ V+ARSS EAEY S+
Sbjct: 136 IPTYPLSILAYCDADWGSDPDDRSVDA--CVFLGPNLISWWAKKQAVIARSSTEAEYSSL 193
Query: 513 ALGVSEMLWVR 523
AL SE+LW++
Sbjct: 194 ALAKSELLWIK 204
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 17/119 (14%)
Query: 437 RILGYLKSAPRRGILFSKHGHLKIEAYTDADWA-GSLDDRRSTSGYCTFVGGNLVTWRSK 495
R+L YLK P +G+ F + L+I+ YT+ADWA G D RRS S C F W
Sbjct: 2 RVLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSISEQCFFC------W--- 52
Query: 496 KQNVVARSSAEAEYRSMALGVSEMLWVRKLIEDLKYSNSGTSILLCDNKAAISIAQNLV 554
SS+EAEYR++A E+ + L+ DLK + +L CDN++AI IA N V
Sbjct: 53 -------SSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPV 104
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 14/135 (10%)
Query: 342 EVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQAGVWKI------VDLGQ 395
E+ ++KG+ + Q Y ++L++ ML C ++ + H ++++ VD
Sbjct: 2 EILINSKGLILHQTDYASEILKKFNMLDCNST-----ITHADANIIYEVKEEDEGVDPTM 56
Query: 396 YQRLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILF--- 452
++RL+G L YL +RP I+Y + +VS++M P ++ + +IL Y+ S + GILF
Sbjct: 57 FRRLIGSLRYLCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVV 116
Query: 453 SKHGHLKIEAYTDAD 467
L +E Y+DAD
Sbjct: 117 QATEQLDMEGYSDAD 131
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 338 ILSCEVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQA-GVWKIVDLGQY 396
L EVA S GI + QRKY LDLLE++ + G K ++P + + +L D+ Y
Sbjct: 213 FLGLEVAHSKSGISLCQRKYCLDLLEDSGLTGSKPMNTPSDPSIKLHNDSAPSFPDIPAY 272
Query: 397 QRLVGRLIYLSHTRPDIAY 415
+RL+GRL+YL+ TRPDI Y
Sbjct: 273 RRLIGRLLYLNTTRPDITY 291
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 19/120 (15%)
Query: 128 EMKALAKSGTW---DLAASXVEKKNQW------DVSGCLQXSTRRMAQLNSTRLGWWQKD 178
E+ AL ++GTW DL + +W +V G ++ R A+L + G+ Q
Sbjct: 4 EITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIE---RYKARLVAK--GYNQ-- 56
Query: 179 IHKLMVLITKXPLLXLQRXTPIKISLSCAVNLNWELHQFDVKNAFLHGDLEDDVYMDVPP 238
I L T P+ L T ++ ++ A +W LHQFDV NAFLHG+L++DVYM +PP
Sbjct: 57 IEGLDYFDTYSPVAKL---TTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPP 113
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 470 GSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGVSEMLWVRKLIEDL 529
G DD++ST+ Y +G ++W SKKQ +VA SS+EA+Y + + + LW+ L+E+L
Sbjct: 66 GDQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVATSYAACQALWIEMLLEEL 125
Query: 530 KYSNSGTSILLCDNKAAISIAQ 551
LL DNK AI +A
Sbjct: 126 NAFEVDRIKLLVDNKLAIDLAD 147
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 32/41 (78%)
Query: 198 TPIKISLSCAVNLNWELHQFDVKNAFLHGDLEDDVYMDVPP 238
T I++ L+ A NW LHQ DV NAFLHGDL++DVYMD+PP
Sbjct: 1000 TTIRLVLALASLNNWHLHQLDVNNAFLHGDLQEDVYMDIPP 1040
>IMGA|Medtr3g162300.1 retrotransposon like protein, putative
chr03_pseudomolecule_IMGAG_V3 42355834-42354953 H
EGN_Mt090430 20090702
Length = 58
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 34/53 (64%)
Query: 462 AYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMAL 514
A T WAG RRST+ YC F+G N ++W SKKQ V+RSS EAEYR L
Sbjct: 2 ARTPTYWAGCPLTRRSTTDYCIFLGSNCISWASKKQPTVSRSSTEAEYREKEL 54
>IMGA|Medtr1g102700.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21129202-21129726 H
EGN_Mt090430 20090702
Length = 135
Score = 58.5 bits (140), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 391 VDLGQYQRLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGI 450
VD Q++ L+G L YL +TRPD+A +I L+SQ+M SH+ AV R+L Y+K I
Sbjct: 26 VDFTQFRMLIGCLRYLCNTRPDLALSIGLLSQFMQNLGVSHMIAVKRMLIYIKGKVEHAI 85
Query: 451 LFSKH 455
LFS +
Sbjct: 86 LFSNN 90
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 453 SKHGHLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSM 512
+K G K+E Y+D+D G DRRSTSG ++W +K+Q + A SS EAEY +
Sbjct: 6 NKKGESKLEGYSDSDRCGDRMDRRSTSGCLFKFNDAAISWCTKRQPITALSSCEAEYIAG 65
Query: 513 ALGVSEMLWVRKLIEDL 529
+ +W+ +I++L
Sbjct: 66 TFAACQAIWLDNVIKEL 82
>IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
39665230-39664877 H EGN_Mt090430 20090702
Length = 117
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 339 LSCEVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRL--QAGVWKIVDLGQY 396
L E SN +F+SQ KY DL+ + + CK + +E N + Q G + D Y
Sbjct: 34 LGLEALSSNDDLFLSQAKYASDLVSQAGLTDCKIEYTRLEPNIQFTPQDGTL-LDDATLY 92
Query: 397 QRLVGRLIYLSHTRPDIAYAISLVS 421
VG LIYL++TRP+I+Y + LVS
Sbjct: 93 WHFVGSLIYLTNTRPNISYFVHLVS 117