Jatropha Genome Database

JcCA0270701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0270701.10 + phase: 2 /pseudo/partial
         (205 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g019940.1 Fumarate reductase/succinate dehydrogenase ...   307   2e-84
IMGA|Medtr6g006620.1 H+-transporting two-sector ATPase, alpha/be...    91   4e-19

>IMGA|Medtr5g019940.1 Fumarate reductase/succinate dehydrogenase
           flavoprotein, N-terminal; chr05_pseudomolecule_IMGAG_V3
           7498474-7505943 E EGN_Mt090430 20090702
          Length = 631

 Score =  307 bits (786), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/153 (95%), Positives = 152/153 (99%)

Query: 51  MERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISET 110
           MERYAPTAKDLASRDVVSRSMTMEIREGRGVGP KDHIYLHLNHLPPDVLKERLPGISET
Sbjct: 308 MERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEKDHIYLHLNHLPPDVLKERLPGISET 367

Query: 111 AAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTVKGNDPDAVVPGLMAAGEAACAS 170
           AAIFAGVDVTKEPIPVLPTVHYNMGGIPTN+HGEVVT+KG+DPDA+VPGLMAAGEAACAS
Sbjct: 368 AAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDALVPGLMAAGEAACAS 427

Query: 171 VHGANRLGANSLLDIVVFGRACANRVAEINRPG 203
           VHGANRLGANSLLDIVVFGRACANRVAEI++PG
Sbjct: 428 VHGANRLGANSLLDIVVFGRACANRVAEIHKPG 460


>IMGA|Medtr6g006620.1 H+-transporting two-sector ATPase, alpha/beta
           subunit, central region; Rhodopsin-like GPCR
           superfamily; Blue (type 1) copper domain; Fumarate
           reductase, flavoprotein subunit
           chr06_pseudomolecule_IMGAG_V3 982461-987909 E
           EGN_Mt090430 20090702
          Length = 662

 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 84/158 (53%), Gaps = 20/158 (12%)

Query: 51  MERYAP---TAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGI 107
           MER+ P      +LA RDVV+RS+  ++++       + ++ L ++H P + +    P I
Sbjct: 369 MERFMPLYDKRGELAPRDVVARSIDDQLKKRN-----EKYVLLDISHKPKNEILSHFPNI 423

Query: 108 SETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTVKGNDPDAVVPGLMAAGEAA 167
           + T   + G+D+T+ PIPV+P  HY  GG+     GE            V GL  AGE A
Sbjct: 424 ASTCLQY-GLDITRHPIPVVPAAHYMCGGVHAGLQGETN----------VKGLYVAGEVA 472

Query: 168 CASVHGANRLGANSLLDIVVFG-RACANRVAEINRPGL 204
           C  +HGANRL +NSLL+ +VF  RA    V ++    L
Sbjct: 473 CTGLHGANRLASNSLLEALVFAERAVQPSVDQMKSSSL 510