Jatropha Genome Database

JcCA0270361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0270361.10 + phase: 2 /partial
         (230 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233662_51.1 Zinc finger, FYVE/PHD-type AC233662.1 243724-...   229   1e-60
IMGA|Medtr4g078970.1 hypothetical protein chr04_pseudomolecule_I...   157   5e-39
IMGA|Medtr7g025140.1 hypothetical protein chr07_pseudomolecule_I...   144   4e-35
IMGA|Medtr7g124390.1 PHD finger transcription factor, putative p...    55   3e-08
IMGA|Medtr7g124570.1 PHD-type zinc finger protein, putative chr0...    55   3e-08

>IMGA|AC233662_51.1 Zinc finger, FYVE/PHD-type AC233662.1
           243724-237189 E EGN_Mt090430 20090702
          Length = 752

 Score =  229 bits (584), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/239 (54%), Positives = 157/239 (65%), Gaps = 37/239 (15%)

Query: 1   LEIPKHASSSGIRKITFKFSKRKEDYDSQIAPS-----------------------VAQP 37
           +EIPKHASS+GIRKITFKFSKRKEDYD    P+                           
Sbjct: 144 MEIPKHASSTGIRKITFKFSKRKEDYDDYQTPTGYTDGSGSDYGFGYGNGSGYGYGYGYH 203

Query: 38  VGNEICQEQFY------KKEYGKHYSACAEMLENTDRYFCAPNMELKMSKKVVPNNYPTN 91
             +E      Y      +  YG+ Y       E+++ Y  + NMELKMSKKVVPN +P N
Sbjct: 204 GDDEYLANDDYNNNGLVESSYGRGYVP----YEDSELY--SGNMELKMSKKVVPNAFPNN 257

Query: 92  VKKLLSTGILDGARVKYL-SPGR-ELYGIIEGGGYLCGCSLCNFSKVLSAHEFEKHAGSR 149
           VKKLLSTGILDGA VKY+ +PG+ EL GII  GGYLCGCS+C++S+VLSA+EFE+HAG++
Sbjct: 258 VKKLLSTGILDGAAVKYIYNPGKVELDGIIGDGGYLCGCSMCSYSRVLSAYEFEQHAGAK 317

Query: 150 TRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSSINGELFEIWKASFQQRN 208
           TRHPNNHI LENGKPI SII E+KTA  S   EVIK+VAGSSIN   F++WK S  Q N
Sbjct: 318 TRHPNNHIFLENGKPIYSIIHEIKTATNSTPDEVIKNVAGSSINEGSFQVWKESLLQSN 376


>IMGA|Medtr4g078970.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 15585620-15579474 E
           EGN_Mt090430 20090702
          Length = 453

 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 98/132 (74%), Gaps = 1/132 (0%)

Query: 75  MELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE-LYGIIEGGGYLCGCSLCNF 133
            ++K ++K  PN +PTNV+ L+STG+LDG  VKY+S  RE L GII+G  YLCGC  CN+
Sbjct: 305 QDIKSTRKESPNTFPTNVRSLISTGMLDGVPVKYVSVAREELRGIIKGTTYLCGCQSCNY 364

Query: 134 SKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSSIN 193
           +K L+A EFEKHAG +++HPNNHI+ ENGK I  I+QEL++ P S+L + I+ + G+ IN
Sbjct: 365 AKGLNAFEFEKHAGCKSKHPNNHIYFENGKTIYQIVQELRSTPESSLFDTIQTIFGAPIN 424

Query: 194 GELFEIWKASFQ 205
            + F IWK SFQ
Sbjct: 425 QKAFRIWKESFQ 436


>IMGA|Medtr7g025140.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 6043238-6039935 E
           EGN_Mt090430 20090702
          Length = 537

 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 67/134 (50%), Positives = 94/134 (70%), Gaps = 2/134 (1%)

Query: 74  NMELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE--LYGIIEGGGYLCGCSLC 131
           N E K +KK   N++P+NVK LLSTGI DG  VKY +  RE  L G+I+G GYLC C +C
Sbjct: 387 NKEPKTAKKPSTNSFPSNVKSLLSTGIFDGIPVKYCTWSREKNLQGVIKGTGYLCSCDIC 446

Query: 132 NFSKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSS 191
              K L+A+EFE+HAG++++HPN+HI  ENGK + +++QELK +P   L + I+ V G++
Sbjct: 447 KGQKALNAYEFERHAGAKSKHPNSHIFFENGKSVYAVVQELKNSPQEMLFDAIQTVTGAT 506

Query: 192 INGELFEIWKASFQ 205
           IN   F  WK+S+Q
Sbjct: 507 INQRNFRTWKSSYQ 520


>IMGA|Medtr7g124390.1 PHD finger transcription factor, putative
           putative chr07_pseudomolecule_IMGAG_V3 29186114-29185357
           E EGN_Mt090430 20090702
          Length = 146

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%)

Query: 115 LYGIIEGGGYLCGCSLCNFSKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKT 174
           L G+I   G LC C LC   +V+S  +FE HA  + R    +I  ENGK +  +++  + 
Sbjct: 10  LRGVIRDEGILCSCCLCEGRRVISPSQFEIHACKQYRRAVEYICFENGKSLLDLLRACRG 69

Query: 175 APLSALGEVIKDVAGS 190
           APL  L   I+++  S
Sbjct: 70  APLHDLEATIQNIVCS 85


>IMGA|Medtr7g124570.1 PHD-type zinc finger protein, putative
           chr07_pseudomolecule_IMGAG_V3 29275781-29275262 E
           EGN_Mt090430 20090702
          Length = 108

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%)

Query: 115 LYGIIEGGGYLCGCSLCNFSKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKT 174
           L G+I   G LC C LC   +V+S  +FE HA  + R    +I  ENGK +  +++  + 
Sbjct: 10  LRGVIRDEGILCSCCLCEGRRVISPSQFEIHACKQYRRAVEYICFENGKSLLDLLRACRG 69

Query: 175 APLSALGEVIKDVAGS 190
           APL  L   I+++  S
Sbjct: 70  APLHDLEATIQNIVCS 85