Jatropha Genome Database

JcCA0270011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0270011.10 - phase: 1 /pseudo/partial
         (272 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g048960.1 SBP chr05_pseudomolecule_IMGAG_V3 20837686-...    49   4e-06

>IMGA|Medtr5g048960.1 SBP chr05_pseudomolecule_IMGAG_V3
           20837686-20832720 E EGN_Mt090430 20090702
          Length = 503

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 36/53 (67%), Gaps = 3/53 (5%)

Query: 221 LNAKYCASDENGSTVDLLQLSSHLHRVEQQRNSAQVKHEVED--FSS-FLTTY 270
           +N+K     E+G TVDL QLSS+L RVE+QRNS  VK E ED  FS+ F  T+
Sbjct: 427 INSKENIKSEHGGTVDLFQLSSNLQRVEKQRNSVLVKWENEDCCFSNVFFLTW 479