Jatropha Genome Database

JcCA0269931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269931.10 - phase: 0 /pseudo
         (263 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g139330.1 Riboflavin biosynthesis protein RibD chr08_...   265   2e-71
IMGA|Medtr7g089780.1 CMP/dCMP deaminase, zinc-binding; Bacterial...    85   3e-17

>IMGA|Medtr8g139330.1 Riboflavin biosynthesis protein RibD
           chr08_pseudomolecule_IMGAG_V3 33987054-33990936 E
           EGN_Mt090430 20090702
          Length = 475

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/162 (79%), Positives = 145/162 (89%)

Query: 74  ILAKDGSNEGKDDGFYIRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHPKAGQPH 133
           + A++  ++  DDGFY+R+ VELARK +G TSPNP+VGCVIVK G IVG+GFHPK GQPH
Sbjct: 62  VRAQNNHHQDNDDGFYMRKSVELARKGLGYTSPNPLVGCVIVKHGNIVGQGFHPKPGQPH 121

Query: 134 AEVFALRDAGDLAENATAYVSLEPCNHYGRTPPCTEALIKAKIRKVVIGMVDPNPIVASS 193
           AEVFALRDAGDL+ENATAYVSLEPCNH+GRTPPCTEALIKAKI+KVVIGMVDPNPIVAS 
Sbjct: 122 AEVFALRDAGDLSENATAYVSLEPCNHFGRTPPCTEALIKAKIKKVVIGMVDPNPIVASK 181

Query: 194 GLDRLRDAGIDVTFGIEEELCKRLNEAYIHQMLTGKPFVTLR 235
           G+DRLRDAGI+V  G+EEELCK LNEAYIH MLTGKP +TLR
Sbjct: 182 GVDRLRDAGIEVVVGVEEELCKSLNEAYIHHMLTGKPLLTLR 223


>IMGA|Medtr7g089780.1 CMP/dCMP deaminase, zinc-binding; Bacterial
           bifunctional deaminase-reductase, C-terminal; Conserved
           hypothetical protein CHP02464
           chr07_pseudomolecule_IMGAG_V3 19836850-19841127 E
           EGN_Mt090430 20090702
          Length = 509

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 4/179 (2%)

Query: 67  SVMVKCQILAKDGSNEGKDDGFYIRRCVELARKAIGCTSPNPMVGCVIVK-DGKIVGEGF 125
           S++ KC+  + D  N   D G YIRR   +A K+ G TSP+P  GCVI    G + GEG+
Sbjct: 15  SIICKCKA-SNDTHNHALDAG-YIRRAALIADKSAGFTSPHPNFGCVIATPSGDVAGEGY 72

Query: 126 HPKAGQPHAEVFALRDAGDLAENATAYVSLEPCNHYGRTPPCTEALIKAKIRKVVIGMVD 185
               G   AEV A+  AG+    ATAY+++EP +  G       AL++  +++VVIGM  
Sbjct: 73  LYAQGTSPAEVQAVTSAGERCRGATAYLNMEPGDCDGDN-TAVSALLQGGVKRVVIGMRH 131

Query: 186 PNPIVASSGLDRLRDAGIDVTFGIEEELCKRLNEAYIHQMLTGKPFVTLR*QQYPYLII 244
           P      + +  LR  G+ V    E+   K + +A    +L   P +     + P+ ++
Sbjct: 132 PLQHFRGNAVRALRSQGLQVDLLGEDLTSKIIEDAQKECLLVNAPLICRASSRVPFSVL 190