Jatropha Genome Database

JcCA0269921.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269921.20 + phase: 0 /pseudo
         (140 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g079520.1 SelT/selW/selH selenoprotein chr05_pseudomo...    84   2e-17
IMGA|Medtr4g013030.1 SelT/selW/selH selenoprotein chr04_pseudomo...    82   9e-17
IMGA|Medtr4g012950.1 SelT/selW/selH selenoprotein chr04_pseudomo...    82   9e-17

>IMGA|Medtr5g079520.1 SelT/selW/selH selenoprotein
           chr05_pseudomolecule_IMGAG_V3 29652974-29656034 E
           EGN_Mt090430 20090702
          Length = 230

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 43/52 (82%)

Query: 74  GDIGVGNTVKIDFCSSCSYRGTAVTMKKMLETQFPGIHVMLANYPPPLPXRV 125
           G  G GNTV I+FCSSCSY+GTAVT+KKMLE  FPGI V+ ANYPPPLP R+
Sbjct: 67  GGAGFGNTVNINFCSSCSYKGTAVTVKKMLEIAFPGIEVIPANYPPPLPKRL 118


>IMGA|Medtr4g013030.1 SelT/selW/selH selenoprotein
           chr04_pseudomolecule_IMGAG_V3 2455614-2451802 E
           EGN_Mt090430 20090702
          Length = 223

 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 43/53 (81%)

Query: 74  GDIGVGNTVKIDFCSSCSYRGTAVTMKKMLETQFPGIHVMLANYPPPLPXRVC 126
           G IG GNTV IDFC+SCSY+G AV++K  LE+ FPGI+V+LANYPPPLP R  
Sbjct: 69  GPIGAGNTVSIDFCTSCSYKGNAVSVKNTLESLFPGINVVLANYPPPLPKRAL 121


>IMGA|Medtr4g012950.1 SelT/selW/selH selenoprotein
           chr04_pseudomolecule_IMGAG_V3 2417265-2413452 F
           EGN_Mt090430 20090702
          Length = 223

 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 43/53 (81%)

Query: 74  GDIGVGNTVKIDFCSSCSYRGTAVTMKKMLETQFPGIHVMLANYPPPLPXRVC 126
           G IG GNTV IDFC+SCSY+G AV++K  LE+ FPGI+V+LANYPPPLP R  
Sbjct: 69  GPIGAGNTVSIDFCTSCSYKGNAVSVKNTLESLFPGINVVLANYPPPLPKRAL 121