Jatropha Genome Database

JcCA0269921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269921.10 - phase: 2 /pseudo/partial
         (376 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g013060.1 Fatty acid desaturase chr04_pseudomolecule_...   433   e-122
IMGA|Medtr5g079460.1 Fatty acid desaturase chr05_pseudomolecule_...   419   e-117
IMGA|Medtr7g111900.1 Fatty acid desaturase chr07_pseudomolecule_...   153   2e-37
IMGA|AC233577_39.1 Fatty acid desaturase AC233577.5 182710-18086...   145   4e-35
IMGA|Medtr8g145530.1 Fatty acid desaturase chr08_pseudomolecule_...    74   1e-13

>IMGA|Medtr4g013060.1 Fatty acid desaturase
           chr04_pseudomolecule_IMGAG_V3 2464310-2468599 E
           EGN_Mt090430 20090702
          Length = 440

 Score =  433 bits (1114), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 197/268 (73%), Positives = 231/268 (86%)

Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
           N++ GH LHSSILVPYHGWRISHRTHHQ HG+VE DESW PLPEKI++ LD ST+++RFT
Sbjct: 173 NSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPEKIFRSLDNSTKMLRFT 232

Query: 167 IPLPMLAYPFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIF 226
           IP PMLAYPFYLWSRSPGK+GSHF+P S+LF P+ERK V+TST+CW+ MA LL    F+ 
Sbjct: 233 IPFPMLAYPFYLWSRSPGKKGSHFDPNSDLFVPNERKDVITSTVCWTAMAALLVGLGFVM 292

Query: 227 GPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLTTVDRDYGFF 286
           GP+Q+LK YG+PY +FVMWLD VTYLHHHGH+ KLPWYRG+EWSYLRGGLTT+DRDYG  
Sbjct: 293 GPIQLLKLYGVPYVLFVMWLDLVTYLHHHGHEDKLPWYRGQEWSYLRGGLTTLDRDYGLI 352

Query: 287 NNIHHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPKKSGAFPFHLFESLLRSI 346
           NNIHHDIGTHVIHHLFPQIPHYHLIEAT+AAKPVLG+YY+EPKKS   PFHL   L++S+
Sbjct: 353 NNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGRYYKEPKKSSPLPFHLIGDLIKSM 412

Query: 347 REDHYVSDIGEIVYYQTDPELYRIPKSK 374
           ++DH+VSD G++VYYQTDP L     SK
Sbjct: 413 KKDHFVSDTGDVVYYQTDPNLSGSSTSK 440


>IMGA|Medtr5g079460.1 Fatty acid desaturase
           chr05_pseudomolecule_IMGAG_V3 29627982-29625700 E
           EGN_Mt090430 20090702
          Length = 391

 Score =  419 bits (1076), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 190/263 (72%), Positives = 225/263 (85%)

Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
           NN VGH LHSSILVPYHGWRISH+THHQ HGNVE+DESWVPL EK+Y  LD  T+ +RF+
Sbjct: 125 NNFVGHILHSSILVPYHGWRISHKTHHQNHGNVERDESWVPLTEKVYNSLDNMTKFVRFS 184

Query: 167 IPLPMLAYPFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIF 226
           +PLP+ AYP YLWSRSPGK GSHF+PYS+LF+P+ERK V  ST+CW +M  LL    F  
Sbjct: 185 VPLPLFAYPIYLWSRSPGKSGSHFHPYSDLFSPNERKEVTVSTVCWLLMFSLLLYLSFTT 244

Query: 227 GPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLTTVDRDYGFF 286
            P+ +LK YG+PYWIFVMWLDFVTYLHHHG+ QKLPWYRG+EW+YLRGGLTTVDRDYG+ 
Sbjct: 245 SPLLILKLYGVPYWIFVMWLDFVTYLHHHGYTQKLPWYRGQEWTYLRGGLTTVDRDYGWI 304

Query: 287 NNIHHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPKKSGAFPFHLFESLLRSI 346
           NNIHHDIGTHV+HHLFPQIPHYHL+EATKAAKP+ G YYREP+KS   PFHL + LL+S+
Sbjct: 305 NNIHHDIGTHVVHHLFPQIPHYHLVEATKAAKPIFGDYYREPEKSSPLPFHLIKYLLQSM 364

Query: 347 REDHYVSDIGEIVYYQTDPELYR 369
            EDH+VSD G++V+YQTDP+L++
Sbjct: 365 NEDHFVSDTGDVVFYQTDPQLHK 387


>IMGA|Medtr7g111900.1 Fatty acid desaturase
           chr07_pseudomolecule_IMGAG_V3 26389378-26394723 E
           EGN_Mt090430 20090702
          Length = 392

 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 136/258 (52%), Gaps = 20/258 (7%)

Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKI------YKELDLST 160
           ++ VG  LHS++LVPY  W+ SHR HH   G++E+DE +VP  +        Y   +   
Sbjct: 127 DDTVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSSIYWYSKYLSNNPLG 186

Query: 161 RIMRFTIPLPMLAYPFYLWSRSPGKE----GSHFNPYSNLFAPHERKAVLTSTLCWSVMA 216
           R++  TI L  L +P YL     G+       HFNP+  +++  ER  +  S      + 
Sbjct: 187 RVLTITITL-TLGWPLYLALNVSGRPYDRFACHFNPHGPIYSDRERLQIYVSDAGILAVC 245

Query: 217 LLLFCSCFIFGPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGL 276
             L+      G   V+  YG+P  +   +L  +T+L H      LP Y   EW +LRG L
Sbjct: 246 FGLYHLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHT--HPALPHYDSSEWDWLRGAL 303

Query: 277 TTVDRDYGFFNNIHHDI-GTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPKKSGAFP 335
            TVDRDYG  N + H+I  THV HHLF  +PHYH +EATKA KP+LG YYR  +     P
Sbjct: 304 ATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGDYYRLDET----P 359

Query: 336 FHLFESLLRSIREDHYVS 353
           F  +++L R  RE  YV 
Sbjct: 360 F--YQALWREARECIYVE 375


>IMGA|AC233577_39.1 Fatty acid desaturase AC233577.5 182710-180865 E
           EGN_Mt090430 20090702
          Length = 343

 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 137/257 (53%), Gaps = 17/257 (6%)

Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEK----IYKELDLSTRI 162
           +++VG  LH+S+LVPY  W+ISHR HH    ++E+DE +VP P+       K L+     
Sbjct: 79  DDLVGFILHTSLLVPYFSWKISHRRHHSNTASLERDEVFVPKPKSNVGWYSKYLNNPLGR 138

Query: 163 MRFTIPLPMLAYPFYL----WSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLCWSVMALL 218
               +    L +P YL    + R   +  SH++PY+ +++  ER  V  S         L
Sbjct: 139 ALTLLITLTLGWPLYLAFNVFGRPYDRFASHYHPYAPIYSKRERLQVFVSIAAVLAATYL 198

Query: 219 LFCSCFIFGPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLTT 278
           L+    + G V ++  Y +P  I   +L  +TYL H      LP Y  KEW +LRG L T
Sbjct: 199 LYFIASLKGFVWLICVYFVPLLIVNGFLVTITYLQHTHFS--LPHYDSKEWDWLRGALAT 256

Query: 279 VDRDYGFFNNI-HHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPKKSGAFPFH 337
           VDRDYG    + HH   THV HH+F  +PHYH +EATKA KP+LG+YY+        PF 
Sbjct: 257 VDRDYGILIKVFHHITDTHVAHHIFSTMPHYHAMEATKAMKPILGEYYQFDDT----PF- 311

Query: 338 LFESLLRSIREDHYVSD 354
            +++L R  +E  YV  
Sbjct: 312 -YKALWREAKECLYVEQ 327


>IMGA|Medtr8g145530.1 Fatty acid desaturase
           chr08_pseudomolecule_IMGAG_V3 35397649-35391594 E
           EGN_Mt090430 20090702
          Length = 446

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 24/267 (8%)

Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
            +IVG      ++ PY  WR  H  HH     +++D +W P    ++++   S+  +R  
Sbjct: 184 EDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLKEDTAWQP----VWQDEFESSPFLRKA 239

Query: 167 IPLPMLAY-PFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLC-WSVMALLLFCSCF 224
           I   +  Y PF  W        SHF+     F P+E K V  S  C ++ +A+      +
Sbjct: 240 I---IYGYGPFRCWMSIAHWLVSHFD--LKTFRPNEIKRVKISLACVFAFIAIGWPLIIY 294

Query: 225 IFGPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLT-TVDRDY 283
             G +  +KF+ +P+  +  W+   T +HH      +P+   +EW+  +  L  TV   Y
Sbjct: 295 KTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTA--PHIPFKNSEEWNAAQAQLNGTVHCAY 352

Query: 284 -GFFNNIHHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPKKSGAFPFHLFESL 342
             +   + HDI  H+ HH+ P+IP Y+L  A K+ +   GKY  E     ++ + L +++
Sbjct: 353 PQWIEILCHDINVHIPHHISPKIPSYNLRAAHKSIQENWGKYLNE----ASWNWRLMKTI 408

Query: 343 LRSI----REDHYVSDIGEIVYYQTDP 365
           +       ++ +YVS   E+   ++ P
Sbjct: 409 MTVCHVYDKQQNYVS-FDEVAPKESRP 434