Jatropha Genome Database

JcCA0267571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0267571.10 - phase: 2 /partial
         (272 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g096540.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   466   e-132
IMGA|Medtr4g165910.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   189   1e-48
IMGA|Medtr7g132920.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   188   2e-48
IMGA|Medtr8g137340.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   184   5e-47
IMGA|Medtr8g137330.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   183   7e-47
IMGA|Medtr2g009230.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   140   8e-34
IMGA|Medtr7g120880.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   131   4e-31
IMGA|Medtr7g068330.1 MCM chr07_pseudomolecule_IMGAG_V3 13985385-...    92   2e-19

>IMGA|Medtr4g096540.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr04_pseudomolecule_IMGAG_V3 20349558-20344347 E
           EGN_Mt090430 20090702
          Length = 840

 Score =  466 bits (1198), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/252 (88%), Positives = 236/252 (93%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           F+DKQIVRLQETPDEIPEGGTPHTVSLL+HDKLVD  KPGDRVEVTGIYRAMSVRVGPTQ
Sbjct: 309 FSDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQ 368

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQP 120
           RTVKSLFKTYIDCLHIKK  KSRML ED MEVDNG  +  E++ FD+ K+ +LKELSKQP
Sbjct: 369 RTVKSLFKTYIDCLHIKKTSKSRMLVEDAMEVDNGQGRNPEEVLFDEEKVAKLKELSKQP 428

Query: 121 DIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQ 180
           DIY+RLTKSLAPNIWELDDVK+GLLCQLFGGNALKL SGASFRGDINILLVGDPGTSKSQ
Sbjct: 429 DIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQ 488

Query: 181 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDK 240
           LLQYIHKLSPRGIYTSGRGSSAVGLTAYV+KDPETGETVLESGALVLSDRGICCIDEFDK
Sbjct: 489 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDK 548

Query: 241 MSEKCRSMLHEV 252
           MS+  RSMLHEV
Sbjct: 549 MSDNARSMLHEV 560


>IMGA|Medtr4g165910.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr04_pseudomolecule_IMGAG_V3 41900221-41894142 E
           EGN_Mt090430 20090702
          Length = 773

 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/252 (39%), Positives = 153/252 (60%), Gaps = 20/252 (7%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           + D Q + +QE P+    G  P TV ++  D LVD+ KPGDRV + GIY+A+    G ++
Sbjct: 188 YKDHQTLSMQEVPENSAPGQLPRTVDIIAEDDLVDSCKPGDRVAIVGIYKALP---GKSK 244

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQP 120
            +V  +F+T +   ++   +K    A  P+              +    ++ +K+++++ 
Sbjct: 245 GSVNGVFRTVLIANNVSLLNKE---ANAPI--------------YSPEDLKNIKKIAERD 287

Query: 121 DIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQ 180
           D +D L  SLAP+I     +K+ ++  + GG    L +G   RGDIN+++VGDP  +KSQ
Sbjct: 288 DTFDLLGNSLAPSIHGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQ 347

Query: 181 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDK 240
           LL+ I  ++P  I T+GRGSS VGLTA V+ D ETGE  LE+GA+VL+DRG+ CIDEFDK
Sbjct: 348 LLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDK 407

Query: 241 MSEKCRSMLHEV 252
           M+++ R  +HEV
Sbjct: 408 MNDQDRVAIHEV 419


>IMGA|Medtr7g132920.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr07_pseudomolecule_IMGAG_V3 30928106-30922243 E
           EGN_Mt090430 20090702
          Length = 720

 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/252 (42%), Positives = 151/252 (59%), Gaps = 18/252 (7%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           F   Q  ++QE  + +P+G  P T+++ +  +L   V PGD VE++GI+  +   VG   
Sbjct: 225 FLRFQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVSPGDVVELSGIFLPIPY-VGFRA 283

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQP 120
                +  TY++                 M V +  ++ EE     D + +Q+K L++  
Sbjct: 284 MRAGLVADTYLEA----------------MSVTHFKKKYEEYELIGDEE-EQIKRLAEDG 326

Query: 121 DIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQ 180
           DIYD+L +SLAP I+  +D+K+ LL  L G     L  G   RGD++I L+GDPG +KSQ
Sbjct: 327 DIYDKLARSLAPEIFGHEDIKKALLLLLVGAPHRTLKDGMKIRGDLHICLMGDPGVAKSQ 386

Query: 181 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDK 240
           LL++I  ++PRG+YT+G+GSS VGLTA V KDP T E VLE GALVLSD GIC IDEFDK
Sbjct: 387 LLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLSDMGICAIDEFDK 446

Query: 241 MSEKCRSMLHEV 252
           M E  R+ +HEV
Sbjct: 447 MDESDRTSIHEV 458


>IMGA|Medtr8g137340.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 32903343-32908349 E
           EGN_Mt090430 20090702
          Length = 883

 Score =  184 bits (466), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 100/256 (39%), Positives = 149/256 (58%), Gaps = 26/256 (10%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           + + Q + LQE+P  +P G  P    +++ + L+D  +PG+ +EVTG+Y   +  +    
Sbjct: 348 YRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVY-TNNFDLSLNT 406

Query: 61  RTVKSLFKTYIDCLHI-KKAD---KSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKEL 116
           +    +F T ++  ++ KK D     ++  ED  E++N                     L
Sbjct: 407 KNGFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIEN---------------------L 445

Query: 117 SKQPDIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGT 176
            K P I +R+ KS+AP+I+  DD+K  +   +FGG    +      RGDIN+LL+GDPGT
Sbjct: 446 GKDPRIGERIIKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGT 505

Query: 177 SKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCID 236
           +KSQ L+Y+ K   R +YT+G+G+SAVGLTA V KDP T E  LE GALVL+DRGIC ID
Sbjct: 506 AKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLID 565

Query: 237 EFDKMSEKCRSMLHEV 252
           EFDKM+++ R  +HE 
Sbjct: 566 EFDKMNDQDRVSIHEA 581


>IMGA|Medtr8g137330.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 32897406-32892230 E
           EGN_Mt090430 20090702
          Length = 929

 Score =  183 bits (465), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 100/256 (39%), Positives = 149/256 (58%), Gaps = 26/256 (10%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           + + Q + LQE+P  +P G  P    +++ + L+D  +PG+ +EVTG+Y   +  +    
Sbjct: 394 YRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVY-TNNFDLSLNT 452

Query: 61  RTVKSLFKTYIDCLHI-KKAD---KSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKEL 116
           +    +F T ++  ++ KK D     ++  ED  E++N                     L
Sbjct: 453 KNGFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIEN---------------------L 491

Query: 117 SKQPDIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGT 176
            K P I +R+ KS+AP+I+  DD+K  +   +FGG    +      RGDIN+LL+GDPGT
Sbjct: 492 GKDPRIGERIIKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGT 551

Query: 177 SKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCID 236
           +KSQ L+Y+ K   R +YT+G+G+SAVGLTA V KDP T E  LE GALVL+DRGIC ID
Sbjct: 552 AKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLID 611

Query: 237 EFDKMSEKCRSMLHEV 252
           EFDKM+++ R  +HE 
Sbjct: 612 EFDKMNDQDRVSIHEA 627


>IMGA|Medtr2g009230.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr02_pseudomolecule_IMGAG_V3 1989579-2000046 H
           EGN_Mt090430 20090702
          Length = 581

 Score =  140 bits (352), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 136/257 (52%), Gaps = 33/257 (12%)

Query: 3   DKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQRT 62
           D Q +++QE+   +  G  P ++ +++ D LVD VK GD V VTG+   ++ R  P  + 
Sbjct: 119 DYQEIKVQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGL---LTARWSPELKD 175

Query: 63  VKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEE---DIQFDDAKIQQLKELS-- 117
           V+                       DP+ + N  R++ E   +I   DA + + K+    
Sbjct: 176 VRCDL--------------------DPVLIANNVRRINELKSEIDISDALVMKFKQFWDH 215

Query: 118 -KQPDIYDR--LTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDP 174
            K   +  R  + + + P I+ L  VK  +   L GG      SG   RG+ ++LLVGDP
Sbjct: 216 FKDAPLKGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHMLLVGDP 275

Query: 175 GTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICC 234
           GT KSQ L++  KLS R + T+G GS++ GLT    KD   GE +LE+GALVL+D G+CC
Sbjct: 276 GTGKSQFLKFSAKLSNRSVITTGLGSTSAGLTVTAVKD--GGEWMLEAGALVLADGGLCC 333

Query: 235 IDEFDKMSEKCRSMLHE 251
           IDEFD M E  R+ +HE
Sbjct: 334 IDEFDSMREHDRATIHE 350


>IMGA|Medtr7g120880.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr07_pseudomolecule_IMGAG_V3 28341732-28334597 H
           EGN_Mt090430 20090702
          Length = 842

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 149/306 (48%), Gaps = 64/306 (20%)

Query: 3   DKQIVRLQE--TPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMS------- 53
           D Q +R+QE    ++  EG  P TV   +   LVD+  PGD V VTGI R ++       
Sbjct: 214 DFQKIRVQELLKHEDHEEGRVPRTVECELTHDLVDSCIPGDVVTVTGIIRGINNYMDIGG 273

Query: 54  ----------------------------------------VRVGPTQRTVKSLFKTYIDC 73
                                                   +  G ++   +  +  Y++ 
Sbjct: 274 GMIFQLLVLVILPTCWPVLQVTTCLDVYVNCEGMLKFLAGIYSGKSKNRNQGFYYLYLEV 333

Query: 74  LHIKKADKSRMLAEDPMEVDNGSRQVE--EDIQFDDAKIQQLKELSKQ--PDIYDRLTKS 129
           + I  + KS+ + +D  +    +R  E  +   F    ++ + + +++   D++ ++  S
Sbjct: 334 VSIVNS-KSQSIPDDSQDSHAKARPTELFDLFSFSSKDLEFVVKFAEEHGSDLFRQILHS 392

Query: 130 LAPNIWELDDVKRGLLCQLFGG------NALKLPSGASFRGDINILLVGDPGTSKSQLLQ 183
           + P+I+  + VK G+   LFGG      +  K+P     RGDI++++VGDPG  KSQLLQ
Sbjct: 393 ICPSIYGHELVKAGITLSLFGGVRRHSMDQNKVP----VRGDIHVIVVGDPGLGKSQLLQ 448

Query: 184 YIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKMSE 243
               +SPRGIY  G  ++  GLT  V KDP T +   E+GA+VL+D G+CCIDEFDKM+ 
Sbjct: 449 AAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTNDYAFEAGAMVLADSGLCCIDEFDKMTS 508

Query: 244 KCRSML 249
           + +++L
Sbjct: 509 EHQALL 514


>IMGA|Medtr7g068330.1 MCM chr07_pseudomolecule_IMGAG_V3
           13985385-13988029 H EGN_Mt090430 20090702
          Length = 221

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 103/195 (52%), Gaps = 19/195 (9%)

Query: 43  VEVTGIYRA----MSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQ 98
           V VTGI R     M +  G ++   +  +  Y++ + I  + KS+ + +D  +    +R 
Sbjct: 29  VTVTGIIRGINNYMDIGGGKSKNRNQGFYYLYLEVVSIVNS-KSQSIPDDSQDSHAKARP 87

Query: 99  VE--EDIQFDDAKIQQLKELSKQ--PDIYDRLTKSLAPNIWELDDVKRGLLCQLFGG--- 151
            E  +   F    ++ + + +++   D++ ++  S+ P+I+  + VK G+   LFGG   
Sbjct: 88  TELFDLFSFSSKDLEFVVKFAEEHGSDLFRQILHSICPSIYGHELVKAGITLSLFGGVRR 147

Query: 152 ---NALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAY 208
              +  K+P     RGDI++++VGDPG  KSQLLQ    +SPRGIY  G  ++  GLT  
Sbjct: 148 HSMDQNKVP----VRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVA 203

Query: 209 VSKDPETGETVLESG 223
           V KDP T +   E+G
Sbjct: 204 VVKDPMTNDYAFEAG 218