Jatropha Genome Database
- JcCA0266291.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0266291.10 - phase: 0 /TE/partial
(373 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip... 131 6e-31
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 119 3e-27
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 109 2e-24
IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse transc... 100 2e-21
IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse transc... 87 2e-17
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 86 2e-17
IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse transc... 79 5e-15
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 78 8e-15
IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse transcrip... 70 2e-12
IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse transc... 69 3e-12
IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse transc... 65 7e-11
IMGA|Medtr6g070680.1 RNA-directed DNA polymerase (Reverse transc... 64 2e-10
IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse transc... 60 2e-09
IMGA|Medtr6g065010.1 reverse transcriptase, putative chr06_pseud... 55 8e-08
IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 ... 51 8e-07
IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse transc... 48 6e-06
IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse transcri... 48 8e-06
>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC234026.1 2154-4412 H EGN_Mt090430
20090702
Length = 705
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 212 RLVINYKPLNTALKWIRYPIPNKKDLLKKLYNANIFSKFDMKSGYWQIQIDPKERYKTAF 271
R+ ++Y+ LN A +YPIP +LL +LY A IFSK D+KSGY QI++ + +KTAF
Sbjct: 203 RMCVDYRALNKARIPDKYPIPVVDELLDELYGATIFSKIDLKSGYHQIRVHENDIHKTAF 262
Query: 272 TVPFGQYEWNVMPFGLKNAPSEFQRIMNDIFNPY-SKFCIVYIDDVLIFSQTIDDHFKHL 330
G YE+ VMPFGL NAP+ FQ MNDIF P+ KF +V+ DD+LI+S+ + +H HL
Sbjct: 263 RTHNGHYEYLVMPFGLMNAPATFQSTMNDIFRPFLRKFVLVFFDDILIYSKDLAEHQSHL 322
Query: 331 KTFCMVIRQNGLALSKTKMDLFKTKIRFLGHYI 363
++ N + +K ++ +LGH I
Sbjct: 323 NQVLTILFSNCFVANLSKCKFGCVEVDYLGHVI 355
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H
EGN_Mt090430 20090702
Length = 1435
Score = 119 bits (297), Expect = 3e-27, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 209 GVPRLVINYKPLNTALKWIRYPIPNKKDLLKKLYNANIFSKFDMKSGYWQIQIDPKERYK 268
G R +Y+ LN +PIP +LL +L+ A FSK D+ SGY QI + ++R+K
Sbjct: 632 GSWRFCTDYRALNAITVKDSFPIPTVDELLDELFGAAYFSKLDLLSGYHQILVKSEDRHK 691
Query: 269 TAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNDIF-NPYSKFCIVYIDDVLIFSQTIDDHF 327
TAF G YEW VMPFGL NAP+ FQ +MN +F N + +V+ DD+L++S T H
Sbjct: 692 TAFRTHQGLYEWLVMPFGLSNAPASFQNLMNKVFCNLLRRSVLVFFDDILVYSPTWHAHL 751
Query: 328 KHLKTFCMVIRQNGLALSKTKMDLFKTKIRFLGHYI 363
HL+ +++ + L +K T+I +LGH +
Sbjct: 752 AHLEEVLQLLQTHSLFAKISKCCFGMTQIDYLGHTV 787
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 109 bits (273), Expect = 2e-24, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 189 SRSPWSCAAFYVNKNAEIERGVPRLVINYKPLNTALKWIRYPIPNKKDLLKKLYNANIFS 248
S SP+S V K + G R ++Y+ LN R+PIP +L +L +A++FS
Sbjct: 604 STSPYSSPVLLVRK----KDGSWRFCVDYRALNAVTICDRFPIPTIDELFDELGSASLFS 659
Query: 249 KFDMKSGYWQIQIDPKERYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNDIFNPYSKF 308
K D++SGY QI++ P++ +KT F G YE+ VMPFGL NAPS FQ MND PY +
Sbjct: 660 KTDLRSGYHQIRVVPEDTHKTTFRTFDGHYEFLVMPFGLSNAPSTFQSAMNDFLRPYLR- 718
Query: 309 CIVYIDDVLIFSQTIDDHFKHLKTFCMVIRQNGLALSKTKMDLFKTKIRFLGHYIEQ 365
+++DDH HL+ ++ + +K I +LGH I
Sbjct: 719 -----------RRSLDDHLIHLRLILDLLASHHFVAKMSKCVFAVDTIDYLGHIISH 764
>IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
7081109-7063368 E EGN_Mt090430 20090702
Length = 377
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 92/178 (51%), Gaps = 21/178 (11%)
Query: 189 SRSPWSCAAFYVNKNAEIERGVPRLVINYKPLNTALKWIRYPIPNKKDLLKKLYNANIFS 248
SR P+S V K G R ++Y+ LN A+K R+P+P +LL L A+ FS
Sbjct: 10 SRGPFSSHVLLVKKKV----GSWRCCVDYRALN-AIK-DRFPLPTIDELLDDLGKASWFS 63
Query: 249 KFDMKSGYWQIQIDPKERYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNDIFNPY-SK 307
K D++ G+ QI++ P++ KTAF G YE VMPFGL NAPS F+ MN++F P+ K
Sbjct: 64 KLDLQQGFHQIRMAPEDIPKTAFRTHHGHYECKVMPFGLCNAPSTFKSTMNNLFQPFLRK 123
Query: 308 FCIVYIDDVLIFSQTIDDHFKHLKTFCMVIRQNGLALSKTKMDLFKTKIRFLGHYIEQ 365
F DH HL+ + + L ++K + ++ +LGH I Q
Sbjct: 124 FAA--------------DHLTHLQLILTKLLEAQFFLKQSKCLFGQRQLEYLGHIISQ 167
>IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
5672480-5674573 E EGN_Mt090430 20090702
Length = 253
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
Query: 209 GVPRLVINYKPLNTALKWIRYPIPNKKDLLKKLYNANIFSKFDMKSGYWQIQIDPKERYK 268
G R+ ++++ LN A +P+P+ L+ + +FS D SGY QI++ P++R K
Sbjct: 20 GKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 79
Query: 269 TAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNDIFNPY-SKFCIVYIDDVLIFSQTIDDHF 327
T+F P+G + + VMPFGL NA + +QR M +F+ K VY+DD+++ S + H
Sbjct: 80 TSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHV 139
Query: 328 KHLKTFCMVIRQNGLALSKTKMDLFKTKIRFLGHYIEQ 365
++L +R+ L L+ K + LG + Q
Sbjct: 140 EYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFVVSQ 177
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
Query: 209 GVPRLVINYKPLNTALKWIRYPIPNKKDLLKKLYNANIFSKFDMKSGYWQIQIDPKERYK 268
G R+ ++++ LN A +P+P+ L+ + +FS D SGY QI++ P++R K
Sbjct: 152 GKVRMSVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 211
Query: 269 TAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNDIFNPY-SKFCIVYIDDVLIFSQTIDDHF 327
T+F P+G + + VMPFGL NA + +QR M +F+ K VY+DD+++ S + H
Sbjct: 212 TSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHV 271
Query: 328 KHLKTFCMVIRQNGLALSKTKMDLFKTKIRFLGHYIEQ 365
++L +R+ L L+ K + LG + Q
Sbjct: 272 EYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQ 309
>IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
12064249-12070465 E EGN_Mt090430 20090702
Length = 152
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 209 GVPRLVINYKPLNTALKWIRYPIPNKKDLLKKLYNANIFSKFDMKSGYWQIQIDPKERYK 268
G R+ ++++ LN A +P+P+ L+ + +FS D SGY QI++ P++R K
Sbjct: 20 GKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 79
Query: 269 TAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNDIFNPY-SKFCIVYIDDVLIFSQTIDDHF 327
T+F P+G + + VM FGL NA + +QR M +F+ K VY+DD+++ S + H
Sbjct: 80 TSFITPWGTFCYKVMSFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHV 139
Query: 328 KHL 330
++L
Sbjct: 140 EYL 142
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 75/155 (48%), Gaps = 1/155 (0%)
Query: 207 ERGVPRLVINYKPLNTALKWIRYPIPNKKDLLKKLYNANIFSKFDMKSGYWQIQIDPKER 266
E G R+ ++Y LN YP+PN L+ S D SGY QI++DP +
Sbjct: 40 ENGKWRMCVDYTDLNMVCPKYPYPLPNIDHLIDNASGFKTLSFMDAYSGYNQIRMDPLDA 99
Query: 267 YKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNDIFNPY-SKFCIVYIDDVLIFSQTIDD 325
KTAF Y + VM FGLKNA + FQR M+ F+ + VYIDD++ ++
Sbjct: 100 PKTAFMTNTKNYHYEVMYFGLKNAGATFQRSMDTAFSQQIGRNREVYIDDLVAKTKEGLS 159
Query: 326 HFKHLKTFCMVIRQNGLALSKTKMDLFKTKIRFLG 360
H L+ +R+ + L+ TK +FLG
Sbjct: 160 HTDDLEEILGQVRKYRIRLNPTKCSFGVQVGKFLG 194
>IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233082.3 16661-16311 H EGN_Mt090430
20090702
Length = 116
Score = 70.1 bits (170), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 283 MPFGLKNAPSEFQRIMNDIFNPY-SKFCIVYIDDVLIFSQTIDDHFKHLKTFCMVIRQNG 341
MPFGL NAPS FQ MND+ PY +F +V+ DD+LI+S + DH HL+ ++ N
Sbjct: 1 MPFGLSNAPSSFQSAMNDMLRPYLRRFVLVFFDDILIYSTNMADHLIHLRLILDLLVTNQ 60
Query: 342 LALSKTKMDLFKTKIRFLGHYI 363
+K + +LGH I
Sbjct: 61 FVAKLSKCVFAVETVHYLGHVI 82
>IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
21895306-21893422 E EGN_Mt090430 20090702
Length = 306
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 287 LKNAPSEFQRIMNDIFNPYSKFCIVYIDDVLIFS-QTIDDHFKHLKTFCMVIRQNGLALS 345
+K +P FQR M+ I + FC++YIDD+L+FS + +DDHFK ++ ++G+ LS
Sbjct: 1 MKQSPGIFQRRMDTILKEFKDFCLIYIDDILVFSNKDLDDHFKKVELVLNKCFEHGVVLS 60
Query: 346 KTKMDLFKTKIRFLGHYIEQGK 367
K K + + KI +LG IE+GK
Sbjct: 61 KKKAVVAQNKINYLGLEIEKGK 82
>IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
5661429-5660887 H EGN_Mt090430 20090702
Length = 180
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 2/156 (1%)
Query: 213 LVINYKPLNTALKWIRYPIPNKKDLLKKLYNANIFSKFDMKSGYWQIQIDPKERYKTAFT 272
+ + Y L+ YP+ N L+ +FS D S Y QI +DPK+ KT F
Sbjct: 1 MSVEYSDLSRVCPKDTYPLINIDKLVDNSSGYKLFSFMDFFSMYNQIPLDPKDEDKTTFM 60
Query: 273 VPFGQYEWNVMPFGLKNAPSEFQRIMNDIF-NPYSKFCIVYIDDVLIFSQTIDDHFKHLK 331
V G + + VM F LKN +QR+MN++F + V +DD+++ + DH HL
Sbjct: 61 VEAGNHFYVVMSFKLKNVGVTYQRMMNEVFKDEIRDMLKVCMDDMIVKYREELDHMSHLN 120
Query: 332 TFCMVIRQNGLALSKTKMDLFKTKIRFLGHYI-EQG 366
+ +R+ + + +F+G Y+ E+G
Sbjct: 121 VVFIKVRKYNMHSNLENCTFGVKAAKFMGLYLTEKG 156
>IMGA|Medtr6g070680.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr06_pseudomolecule_IMGAG_V3
13406591-13406911 H EGN_Mt090430 20090702
Length = 106
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 287 LKNAPSEFQRIMNDIFNPYSKFCIVYIDDVLIFS-QTIDDHFKHLKTFCMVIRQNGLALS 345
+K + FQR M+ I + FC++YIDD+L+FS + +DD+FK ++ ++G+ LS
Sbjct: 1 MKQSQGIFQRRMDTILKEFKDFCLIYIDDILVFSNKDLDDYFKKVELVLNKCVEHGVVLS 60
Query: 346 KTKMDLFKTKIRFLGHYIEQGK 367
K K + + KI +LG IE+GK
Sbjct: 61 KKKAVVAQNKINYLGLEIEKGK 82
>IMGA|Medtr3g059220.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13291757-13291422 H EGN_Mt090430 20090702
Length = 111
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 213 LVINYKPLNTALKWIRYPIPNKKDLLKKLYNANIFSKFDMKSGYWQIQIDPKERYKTAFT 272
+ +Y LN YP+P+ L+ ++ S D SGY +I++ ++ KTAF
Sbjct: 1 MCTDYTNLNKVCPKDAYPLPSIDQLVHNTSRYDLLSFMDAYSGYNKIRMHLEDEEKTAFM 60
Query: 273 VPFGQYEWNVMPFGLKNAPSEFQRIMNDIF-NPYSKFCIVYIDDVLIFS 320
Y + MPFGL+N + FQR+++ +F + K VY+DD+++ S
Sbjct: 61 TDKANYCYKGMPFGLRNTGATFQRLVDKVFKSEIGKTIEVYVDDMVVKS 109
>IMGA|Medtr6g065010.1 reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12073349-12073158 H
EGN_Mt090430 20090702
Length = 63
Score = 54.7 bits (130), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 283 MPFGLKNAPSEFQRIMNDIFNPYSK-FCIVYIDDVLIFSQTIDDHFKHL 330
MPFGL NAPS FQ IMN IF+P+ + F IV+ D +LI+ T DH HL
Sbjct: 1 MPFGLCNAPSIFQAIMNQIFSPHLRCFVIVFFDAILIYIHTFHDHLIHL 49
>IMGA|AC135504_3.1 polyprotein, putative AC135504.61 16846-17064 H
EGN_Mt090430 20090702
Length = 72
Score = 51.2 bits (121), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 229 YPIPNKKDLLKKLYNANIFSKFDMKSGYWQIQIDPKERYKTAFTVPFGQYEWNVMPFGLK 288
YP+PN L+ +FS D S Y QI + ++ KTAF G Y +NVMPFGL+
Sbjct: 8 YPLPNIDKLVDNSSGYKLFSFMDTYSRYNQILMAEGDKKKTAFMTESGNYYYNVMPFGLR 67
Query: 289 N 289
N
Sbjct: 68 N 68
>IMGA|Medtr3g169300.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
44106402-44105385 H EGN_Mt090430 20090702
Length = 308
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%)
Query: 212 RLVINYKPLNTALKWIRYPIPNKKDLLKKLYNANIFSKFDMKSGYWQIQIDPKERYKTAF 271
R+ ++Y LN YP+PN L+ + S D GY QI + ++ KT F
Sbjct: 233 RMSVDYTDLNRVCPKDAYPLPNIDKLVDNSSGFKLLSFMDAYFGYNQIPMVEGDKMKTTF 292
Query: 272 TVPFGQYEWNVMPFGL 287
G Y +NVMPFGL
Sbjct: 293 MTESGNYYYNVMPFGL 308
>IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold AC229695.5 96798-94993 H
EGN_Mt090430 20090702
Length = 555
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 298 MNDIFNPY-SKFCIVYIDDVLIFSQTIDDHFKHLKTFCMVIRQNGLALSKTKMDLFKTKI 356
MN++ PY KF +V+ DD+L++S+ ++ H HL +++++ L + K + ++
Sbjct: 1 MNEVLRPYLRKFALVFFDDILVYSKDVEHHKHHLGAVLALLKEHQLVANYKKCTFGQHQL 60
Query: 357 RFLGHYIE-QGKDSTYRK 373
+LGH I QG + +K
Sbjct: 61 EYLGHIISAQGVAADQKK 78