Jatropha Genome Database

JcCA0265561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265561.10 + phase: 2 /partial
         (128 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g125120.1 Cytochrome cd1-nitrite reductase-like, C-te...   169   4e-43

>IMGA|Medtr4g125120.1 Cytochrome cd1-nitrite reductase-like,
           C-terminal haem d1, putative
           chr04_pseudomolecule_IMGAG_V3 29444563-29437786 E
           EGN_Mt090430 20090702
          Length = 1003

 Score =  169 bits (427), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/123 (69%), Positives = 96/123 (78%), Gaps = 6/123 (4%)

Query: 1   LYRSSEQTNQRILFDIEPFGRHLGTGGQDGLVHIYDLQTGQWTSSFQAAADTVSGFSFHP 60
           LYRS+E TNQRILFDI+P G+HLGTGGQDG VHIYDLQTGQW SSF+AA DTV+ FSFHP
Sbjct: 881 LYRSAENTNQRILFDIDPSGQHLGTGGQDGSVHIYDLQTGQWVSSFEAAQDTVNSFSFHP 940

Query: 61  FLPMAASSSGHRRFQVPDDGHENLLLNDDENCASVWSFFYASAMEN--GTDVQVGDFNSQ 118
           FLP A SSSGHRRF +PD+  E+L L+  ENC SVWSF Y S ME+  G D     FN+Q
Sbjct: 941 FLPHAVSSSGHRRFVIPDENDEDLCLSGRENCVSVWSFCYDSKMEDFKGDD----SFNNQ 996

Query: 119 SES 121
           S S
Sbjct: 997 SGS 999