Jatropha Genome Database
- JcCA0265541.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0265541.20 - phase: 0 /TE/partial
(396 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse transc... 59 5e-09
IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H... 56 4e-08
IMGA|Medtr7g047200.1 Proteinase inhibitor I4, serpin chr07_pseud... 50 1e-06
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc... 50 3e-06
IMGA|Medtr1g125260.1 Polynucleotidyl transferase, Ribonuclease H... 50 3e-06
IMGA|Medtr3g039690.1 Polynucleotidyl transferase, Ribonuclease H... 49 6e-06
>IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
15868030-15871357 E EGN_Mt090430 20090702
Length = 845
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAW----RIANSIEEYQLVPWESNM---QN 240
W LW RN +WQQQ+ + +++ + L W RI +S + P ++ ++
Sbjct: 617 WSLWKCRNMKLWQQQLETNLQVLQRATHVLEEWQTAQRIRSSSSNQTITPQVRSLRQEED 676
Query: 241 RWHPLLTG-FKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTSAPIAEAIVV 299
W G +KCN+DASF + G +RD G + R + + EA+ +
Sbjct: 677 VWKKPAPGRYKCNIDASFSTSLNKVGLGMCLRDDDGAFVLARTEWFAPICDIDVGEAVGL 736
Query: 300 REALSWLKKQ 309
AL WL Q
Sbjct: 737 HTALDWLSNQ 746
>IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 19822787-19820648 H
EGN_Mt090430 20090702
Length = 612
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAW----RIANSIEEYQLVPWESNM---QN 240
W LW RN +WQQQ+ + +++ + L W RI +S + P ++ ++
Sbjct: 388 WSLWKCRNMKLWQQQLETDSQVLQRATHVLEEWQTAQRIRSSSSNQTITPQVRSLRQEED 447
Query: 241 RWHPLLTG-FKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTSAPIAEAIVV 299
W G +KCN+DASF + G +RD G + R + EA+ +
Sbjct: 448 VWKKPAPGRYKCNIDASFSTSLNRVGLGMCLRDDDGAFVLARTKWFAHICDIDAGEAVGL 507
Query: 300 REALSWLKKQ 309
L WL Q
Sbjct: 508 HTTLDWLSNQ 517
>IMGA|Medtr7g047200.1 Proteinase inhibitor I4, serpin
chr07_pseudomolecule_IMGAG_V3 11810592-11808148 E
EGN_Mt090430 20090702
Length = 479
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 190 LWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEYQLVPWESNMQNR-------W 242
+W ARN +IW R S +I R +L AW+ + + P +M NR W
Sbjct: 328 IWTARNDVIWNDAHRTSTSIGR---TTLEAWQQWQEVHKQHSPPVVQHMHNRVQGNNSVW 384
Query: 243 H-PLLTGFKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRA------MKLGRVTSAPIAE 295
P T KCNVDA F + + VRD G+ + + M + + + E
Sbjct: 385 EKPSETWLKCNVDAVFHDRNHITSFACCVRDSRGQFIRAQTKWQRANMTVLEGEAVALLE 444
Query: 296 AIVVREALSWLKKQYQGHRLLLENDNLLVIQAL 328
AI +A W +R++ E+D+ ++QAL
Sbjct: 445 AIHSADANRW-------NRVVFESDSSTLVQAL 470
>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
transcriptase); Hemopexin; Polynucleotidyl transferase,
Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
27457173-27452820 H EGN_Mt090430 20090702
Length = 1147
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 28/138 (20%)
Query: 184 SVAAWDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEYQLVPWESNMQNRWH 243
S+ +W +W RN +W+ ++ I++ Q LNAW
Sbjct: 880 SMTSWSIWKRRNLKLWENKIESPDQILQRAQAVLNAW----------------------- 916
Query: 244 PLLTGFKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTSAPIAEAIVVREAL 303
KCN+DA+ + G I+RD GR +G L S +EA + + L
Sbjct: 917 --AGLLKCNIDATISTTDQTISMGAILRDSEGRFVGAMTNVLKASMSPAESEAWGLHQGL 974
Query: 304 SWLKKQYQGH-RLLLEND 320
W+ GH R++ E+D
Sbjct: 975 KWITT--LGHQRVIFESD 990
>IMGA|Medtr1g125260.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 27568419-27571379 H
EGN_Mt090430 20090702
Length = 227
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 14/148 (9%)
Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEYQLVPWESNMQNR---WH- 243
W +W ARN +IW S +I R +L+AW+ + + L + NR W
Sbjct: 68 WQIWTARNDVIWNDAHHTSTSIGR---TTLDAWQQWQEVHKNSLPSVVQHGHNRVQVWEK 124
Query: 244 PLLTGFKCNVDASF-DPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTSAPI--AEAIVVR 300
P + KCNVDA+F D N + + A VRD G+ + RA + T+ + EA+ +
Sbjct: 125 PTESWLKCNVDAAFHDCNHITSFAC-CVRDSCGQFI--RAQTKWQRTNMTVLEGEAVALL 181
Query: 301 EALSWLKKQYQGHRLLLENDNLLVIQAL 328
EAL + + R++ E+D+ ++QAL
Sbjct: 182 EALHFADAN-RWDRVVFESDSSTLVQAL 208
>IMGA|Medtr3g039690.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr03_pseudomolecule_IMGAG_V3
10571930-10570144 E EGN_Mt090430 20090702
Length = 260
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEY--------QLVPWESNMQ 239
W +W +RN +WQQ S+ +++ + L+ WR A +I Q P
Sbjct: 91 WSIWKSRNMKLWQQHNELSSQVLQRATHLLDEWRAAQAIRSCNNAQSTMPQARPTRQEED 150
Query: 240 NRWHPLLTGFKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTSAPIAEAI 297
N P +KCN+DASF A G +RD G + + + + EA+
Sbjct: 151 NWKKPAQGRYKCNIDASFSTYLNMAGLGMCLRDDVGVFVLAKTEWFAPLCDIDVGEAV 208