Jatropha Genome Database

JcCA0264961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264961.10 - phase: 2 /TE/partial
         (240 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g138090.1 SNF2-related; Chromo; Zinc finger, FYVE/PHD...    72   3e-13
IMGA|Medtr4g165650.1 SNF2-related; Chromo; Helicase, C-terminal;...    69   2e-12
IMGA|Medtr1g017130.1 Chromo; Zinc finger, FYVE/PHD-type chr01_ps...    47   6e-06

>IMGA|Medtr3g138090.1 SNF2-related; Chromo; Zinc finger,
           FYVE/PHD-type; ; chr03_pseudomolecule_IMGAG_V3
           35207579-35198713 E EGN_Mt090430 20090702
          Length = 575

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 104/251 (41%), Gaps = 30/251 (11%)

Query: 7   CQRSYHLSCLNPPLVTAPPGVWHCTFCVEKKMNMGVH---SVSKGVESVWAVREVASDNE 63
           C  +YH SCL PPL    P  W C  CV   +++       +   VE        A+ + 
Sbjct: 68  CNYAYHSSCLLPPLKGPAPDNWRCPECVTPLIDIDKLLDCEMRPTVEGDGDADSDAAKSG 127

Query: 64  GKQKH-KEYLVKHQGLAHVHNLWIPEKELL------LEAPTRVAKFNRRSQAT------- 109
            KQ   K+YLVK +GL+++H  W+PEKE L          T+V  F+R+  ++       
Sbjct: 128 SKQIFVKQYLVKWKGLSYLHCAWVPEKEFLKAFKSHPRLKTKVNNFHRQMASSNTSDEDF 187

Query: 110 -SWKTEWSIPQRLLQKRQLSFSKHRTNGWLVKWTGLSYDHATWELENASFLTSPEARKLI 168
            + + EW+   R++  R      +    +LVKW  L YD   WE E+      PE  +  
Sbjct: 188 VAIRPEWTTVDRIIACR----GDNDEREYLVKWKELPYDECYWESESDISAFQPEIERFN 243

Query: 169 QDYEDGHAKAERKDYENCHDKAD------KMQSLSQANELSSGDSPGAYNHYLKYVNKLR 222
           +        A  K     +D  +      +      + E  SG S   Y   L+ +N LR
Sbjct: 244 RFRSRSSKLASIKQQSRVNDDNELKKQQKEFHQYEHSPEFLSGGSLHPYQ--LEGLNFLR 301

Query: 223 EHWYKGHNAIV 233
             W K  + I+
Sbjct: 302 FSWSKQTHVIL 312


>IMGA|Medtr4g165650.1 SNF2-related; Chromo; Helicase, C-terminal;
           Zinc finger, FYVE/PHD-type; ; ;
           chr04_pseudomolecule_IMGAG_V3 41778652-41770478 E
           EGN_Mt090430 20090702
          Length = 1372

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 24/186 (12%)

Query: 61  DNEGKQKHKEYLVKHQGLAHVHNLWIPEKELLLEAPTRVAKFNRRSQATSWKT---EWSI 117
           D+ G++   E+LVK  G +H+HN WI E  L + A  ++  +  +    +      +W  
Sbjct: 548 DSIGEEVSYEFLVKWVGKSHIHNSWISESHLKVIAKRKLENYKAKYGTATINICEEQWKN 607

Query: 118 PQRLLQKRQLSFSKHRTNGWLVKWTGLSYDHATWE------LENASFLTSP----EARKL 167
           P+RLL  R    SK  T+   VKWTG  Y+  TWE      L+N+S L +     E   L
Sbjct: 608 PERLLAIRT---SKQGTSEAFVKWTGKPYNECTWESLDEPVLQNSSHLITRFNMFETLTL 664

Query: 168 IQDYEDGHAKAERKDYENCHDKADKMQSLSQANELSSGDSPGAYNHYLKYVNKLREHWYK 227
            ++    ++  +  D +N     D +  L Q  EL  G     + H L+ +N LR+ WYK
Sbjct: 665 EREASKENSTKKSSDRQN-----DIVNLLEQPKELRGG---SLFPHQLEALNWLRKCWYK 716

Query: 228 GHNAIV 233
             N I+
Sbjct: 717 SRNVIL 722


>IMGA|Medtr1g017130.1 Chromo; Zinc finger, FYVE/PHD-type
           chr01_pseudomolecule_IMGAG_V3 3555977-3552798 E
           EGN_Mt090430 20090702
          Length = 214

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 14/135 (10%)

Query: 5   KGCQRSYHLSCLNPPLVTAPPGVWHCTFCVEKKMNMGVHSVSKGVESVWAVREVASDNEG 64
           K C  S+H  CL  PL ++    W C  CV    ++      +   +V    +  +    
Sbjct: 77  KTCTYSFHTECLLSPLKSSRLDNWMCPECVSPLNDIDKILDCEMRPTVAGESDAENLRSK 136

Query: 65  KQKHKEYLVKHQGLAHVHNLWIPEKELL------LEAPTRVAKFNRR--------SQATS 110
           +   K+YLVK +GL+++H  W+PE+E L          T+V  F+R+            +
Sbjct: 137 QSLTKQYLVKWKGLSYMHCGWVPEEEFLKVFRINQHLKTKVNNFHRKMGPVRKPDEDFVA 196

Query: 111 WKTEWSIPQRLLQKR 125
            + EW+   R+L  R
Sbjct: 197 IRPEWTTVHRILSCR 211