Jatropha Genome Database

JcCA0264441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264441.10 - phase: 2 /pseudo/partial
         (203 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g010120.1 CBS chr07_pseudomolecule_IMGAG_V3 2120338-2...    87   4e-18
IMGA|Medtr6g062600.1 CBS chr06_pseudomolecule_IMGAG_V3 11503259-...    47   5e-06

>IMGA|Medtr7g010120.1 CBS chr07_pseudomolecule_IMGAG_V3
           2120338-2124503 E EGN_Mt090430 20090702
          Length = 492

 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 81/174 (46%), Gaps = 20/174 (11%)

Query: 24  PEHARVTSDMPLYDILNEFQKGXXXXXXXXXXXXXXXXXX---------XXXXXXGDSEL 74
           P   RV SDMPLY+ILN+FQKG                                 GDS++
Sbjct: 299 PSIPRVPSDMPLYEILNQFQKGSSHMAAVIKTKGKGKETLEIIDEEKFDAKKSVGGDSQI 358

Query: 75  NTPLLNKHDDKSESVIIDIEKAARPTTIKENLTLEPNGVATNMMPHLSXXXXXXXXXXXX 134
            TPLL K   KS++V+IDI+  +   +I E    + N  + N+                 
Sbjct: 359 TTPLLEKMYAKSKNVVIDIDNPSNLPSIDEQTGSQLNAPSENV--------EHAEVIGII 410

Query: 135 TLEDVFEELLQEEIVDETDVYVDVHKRIXXXXXXXXXXXXXXPSNRRLSGQKPA 188
           TLEDV EELLQ EIVDETD +VDVHKRI              PS RRL+ +K A
Sbjct: 411 TLEDVLEELLQVEIVDETDEFVDVHKRI---PVTTASPMARAPSIRRLNSEKRA 461


>IMGA|Medtr6g062600.1 CBS chr06_pseudomolecule_IMGAG_V3
           11503259-11510669 E EGN_Mt090430 20090702
          Length = 476

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 25/28 (89%)

Query: 135 TLEDVFEELLQEEIVDETDVYVDVHKRI 162
           TLEDV EELLQE+I+DETD Y+DVH+ I
Sbjct: 401 TLEDVMEELLQEDILDETDQYIDVHQNI 428