Jatropha Genome Database

JcCA0264101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264101.10 + phase: 0 /partial
         (262 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g144940.1 hypothetical DNA binding protein, putative ...   213   6e-56
IMGA|Medtr3g100610.1 Putative SWI/SNF-related matrix-associated ...   213   6e-56
IMGA|Medtr4g095380.1 Zinc finger, ZZ-type; SWIRM; Homeodomain-re...    57   7e-09

>IMGA|Medtr4g144940.1 hypothetical DNA binding protein, putative
           chr04_pseudomolecule_IMGAG_V3 36644528-36646015 E
           EGN_Mt090430 20090702
          Length = 288

 Score =  213 bits (543), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 115/176 (65%), Positives = 134/176 (76%), Gaps = 7/176 (3%)

Query: 89  DHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKTRQRFAAERARMMST 148
           DHEEREIQRL ANIINHQLKRLELKLKQFAE+ET LM+ECEQVE+ +QRFAAER R++S 
Sbjct: 118 DHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRVISA 177

Query: 149 RIGPAGSTSQMNLAGVGPSMVNNNISSNRQQVMPPS-SQPNISGYGNNQQVHPHVSFMQR 207
           R G AG+T  MN +GVGPSM +N   +NRQQ++  S SQP+ISGYGNNQ +HPH+SF QR
Sbjct: 178 RFGTAGTTPAMNASGVGPSMASNG--NNRQQMISASPSQPSISGYGNNQPIHPHMSFAQR 235

Query: 208 GQQQPMFPLGPRLPLAAIQPSSSAPSNVMFNASGSSQPSLNQ-MLRSVSGPSSSLG 262
                MF LG RLPL+ IQ S SA S  MFNA  + QP  N  +LR VSG +S LG
Sbjct: 236 PS---MFGLGQRLPLSMIQQSQSASSAPMFNAPSNVQPGTNHPLLRPVSGTNSGLG 288


>IMGA|Medtr3g100610.1 Putative SWI/SNF-related matrix-associated
           actin-dependent regulatorof chromatin subfamily C
           member, chr03_pseudomolecule_IMGAG_V3 24126651-24127973
           E EGN_Mt090430 20090702
          Length = 249

 Score =  213 bits (543), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 115/176 (65%), Positives = 134/176 (76%), Gaps = 7/176 (3%)

Query: 89  DHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKTRQRFAAERARMMST 148
           DHEEREIQRL ANIINHQLKRLELKLKQFAE+ET LM+ECEQVE+ +QRFAAER R++S 
Sbjct: 79  DHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRVISA 138

Query: 149 RIGPAGSTSQMNLAGVGPSMVNNNISSNRQQVMPPS-SQPNISGYGNNQQVHPHVSFMQR 207
           R G AG+T  MN +GVGPSM +N   +NRQQ++  S SQP+ISGYGNNQ +HPH+SF QR
Sbjct: 139 RFGTAGTTPAMNASGVGPSMASNG--NNRQQMISASPSQPSISGYGNNQPIHPHMSFAQR 196

Query: 208 GQQQPMFPLGPRLPLAAIQPSSSAPSNVMFNASGSSQPSLNQ-MLRSVSGPSSSLG 262
                MF LG RLPL+ IQ S SA S  MFNA  + QP  N  +LR VSG +S LG
Sbjct: 197 PS---MFGLGQRLPLSMIQQSQSASSAPMFNAPSNVQPGTNHPLLRPVSGTNSGLG 249


>IMGA|Medtr4g095380.1 Zinc finger, ZZ-type; SWIRM;
           Homeodomain-related chr04_pseudomolecule_IMGAG_V3
           19820185-19828429 E EGN_Mt090430 20090702
          Length = 1041

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 4/86 (4%)

Query: 91  EEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKTRQRFAAERARMMSTRI 150
           EE +I+ L++ +I  QL +LE KL  F ++E  +MR  E ++++R +   ERA ++S+R+
Sbjct: 902 EEDQIRELTSALIEKQLHKLETKLAFFNDMEHLVMRVKELLDRSRHKLYHERAMIISSRL 961

Query: 151 GPAGSTSQMNLAGVGPSMVNNNISSN 176
           G   S+S+    GV PS+  N I  N
Sbjct: 962 GVPASSSR----GVPPSIPTNRIPMN 983