Jatropha Genome Database
- JcCA0263681.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0263681.10 - phase: 0 /TE/partial
(968 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 233 4e-61
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip... 227 2e-59
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 206 3e-53
IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse transcri... 204 2e-52
IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse transc... 194 1e-49
IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical, ch... 130 4e-30
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 128 1e-29
IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse transcrip... 108 2e-23
IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse transc... 100 5e-21
IMGA|Medtr5g047500.1 Ty3-gypsy-like retroelement pol polyprotein... 91 3e-18
IMGA|Medtr4g073740.1 polyprotein, putative chr04_pseudomolecule_... 87 4e-17
IMGA|AC233082_1.1 Polynucleotidyl transferase, Ribonuclease H fo... 75 2e-13
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 73 7e-13
IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse transc... 70 3e-12
IMGA|Medtr3g026360.1 Polynucleotidyl transferase, Ribonuclease H... 64 5e-10
IMGA|AC229695_24.1 Chromo AC229695.5 111963-111064 H EGN_Mt09043... 57 6e-08
IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse transc... 56 7e-08
IMGA|Medtr3g169290.1 Putative retroelement pol polyprotein, chr0... 55 1e-07
IMGA|Medtr6g065010.1 reverse transcriptase, putative chr06_pseud... 53 8e-07
IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse transc... 51 4e-06
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H
EGN_Mt090430 20090702
Length = 1435
Score = 233 bits (594), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 169/271 (62%), Gaps = 3/271 (1%)
Query: 250 GRIKWLVMPFGLTNASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVL 309
G +WLVMPFGL+NA ++F LM +V LR+ +++ FDDIL++S HL +L VL
Sbjct: 699 GLYEWLVMPFGLSNAPASFQNLMNKVFCNLLRRSVLVFFDDILVYSPTWHAHLAHLEEVL 758
Query: 310 DALQKNELYINLKKCSFMTERILFLGYIVSTKGIHVDDRKIEAIRNWPSPKNVTEVCSFH 369
LQ + L+ + KC F +I +LG+ VS +G+ +D K++A+ +WP+P N+ ++ F
Sbjct: 759 QLLQTHSLFAKISKCCFGMTQIDYLGHTVSGQGVAMDCSKVKAVLDWPTPTNLKQLRGFL 818
Query: 370 GLATFYMWFIKNFSSIVAPITDCLKKEKVRQFVWIEAANRSFEEIKDKLTSAPILALPDF 429
GL +Y FI+ ++++ +P+TD LKK+ F W E A +FE +K LT AP+L+LPDF
Sbjct: 819 GLTGYYRRFIQGYAAVASPLTDLLKKDS---FKWTENAQLAFERLKQSLTKAPVLSLPDF 875
Query: 430 DKLFEVDCDACRIGIGGVLSQSRKPIAFFSEKLNEARQKWSTYGXELYAVFRTFKTWEHY 489
K F ++ DA GIG VLSQ + PIAFFS+KL+ QK S Y ELYA+ + HY
Sbjct: 876 SKSFVLETDASGFGIGAVLSQGKHPIAFFSKKLSPRMQKQSAYVRELYAISEAISKFRHY 935
Query: 490 LLGREFIIYTDHQALTHFQTQKKVSKMHAHW 520
L+G +FII TD ++L Q + +W
Sbjct: 936 LIGHQFIIRTDQKSLKSLTDQAIQTPEQQNW 966
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 806 WDLALAQAEFAYNNAIHSSTKVSPFAIVYRKVLAYTLDLLSFLAGAEMNIAANNLATKHV 865
W L AEF YN + HSS ++PF VY + ++ + + A +L ++
Sbjct: 1253 WFTLLPWAEFWYNTSHHSSIGMTPFRAVYGRDPP---QVVKYEIQSADPPALQDLLSERD 1309
Query: 866 EAFEQVQQFITAANEKYKAVADKHWXYKSFTIGDXVMVYLRKERRGA-----QKKLDWKK 920
Q++ + A K AD+ F +GD V+V L+ R+ + +KL +
Sbjct: 1310 IVLTQLKAHLAKAQNIMKKYADQKRRLLEFEVGDQVLVKLQPYRQASVALRKNQKLGLRY 1369
Query: 921 IGLFQIHKKINDNAYVLNLPEDMKISRTFNVAGLFP 956
G F++ ++ AY L LP KI F+V+ L P
Sbjct: 1370 FGPFEVLARVGSVAYKLALPPTAKIHPVFHVSLLKP 1405
>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC234026.1 2154-4412 H EGN_Mt090430
20090702
Length = 705
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 160/271 (59%), Gaps = 3/271 (1%)
Query: 250 GRIKWLVMPFGLTNASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVL 309
G ++LVMPFGL NA +TF M + PFLRK++++ FDDILI+S+ EH +L +VL
Sbjct: 267 GHYEYLVMPFGLMNAPATFQSTMNDIFRPFLRKFVLVFFDDILIYSKDLAEHQSHLNQVL 326
Query: 310 DALQKNELYINLKKCSFMTERILFLGYIVSTKGIHVDDRKIEAIRNWPSPKNVTEVCSFH 369
L N NL KC F + +LG+++S KG+ VD KI I WP PKNV V F
Sbjct: 327 TILFSNCFVANLSKCKFGCVEVDYLGHVISGKGVAVDPEKIRCILEWPEPKNVKGVRGFL 386
Query: 370 GLATFYMWFIKNFSSIVAPITDCLKKEKVRQFVWIEAANRSFEEIKDKLTSAPILALPDF 429
GL +Y F+K++ I P+T+ KK+ F W A +F +K +TS +L LP+F
Sbjct: 387 GLTGYYRKFVKDYGKIAKPLTELTKKDG---FSWSPTAAEAFNRLKHIMTSPLVLVLPNF 443
Query: 430 DKLFEVDCDACRIGIGGVLSQSRKPIAFFSEKLNEARQKWSTYGXELYAVFRTFKTWEHY 489
FE++CDA GIG VL Q+++P+A+FS+ L+ S Y EL A+ + W HY
Sbjct: 444 SLPFEIECDAAGRGIGAVLMQNKQPVAYFSKALSAGNLSKSVYEKELMALVLCIQHWRHY 503
Query: 490 LLGREFIIYTDHQALTHFQTQKKVSKMHAHW 520
LLG+ F ++TDH++L HF Q+ S W
Sbjct: 504 LLGKAFTVHTDHKSLKHFLQQRVTSPDQQCW 534
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 159/271 (58%), Gaps = 16/271 (5%)
Query: 250 GRIKWLVMPFGLTNASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVL 309
G ++LVMPFGL+NA STF M L P+LR+ R ++HL +L +L
Sbjct: 687 GHYEFLVMPFGLSNAPSTFQSAMNDFLRPYLRR-------------RSLDDHLIHLRLIL 733
Query: 310 DALQKNELYINLKKCSFMTERILFLGYIVSTKGIHVDDRKIEAIRNWPSPKNVTEVCSFH 369
D L + + KC F + I +LG+I+S KG+ D+ KI+AI +WP+P+++T + F
Sbjct: 734 DLLASHHFVAKMSKCVFAVDTIDYLGHIISHKGVQPDEDKIQAILSWPTPRSLTTLRGFL 793
Query: 370 GLATFYMWFIKNFSSIVAPITDCLKKEKVRQFVWIEAANRSFEEIKDKLTSAPILALPDF 429
GL +FY F+++++++ AP+TD L+ K F A +F ++K+++T+ P+L LP+F
Sbjct: 794 GLISFYRRFVRHYATLAAPLTDLLRSTK---FTLNATAEAAFSKLKEQITTTPVLILPNF 850
Query: 430 DKLFEVDCDACRIGIGGVLSQSRKPIAFFSEKLNEARQKWSTYGXELYAVFRTFKTWEHY 489
KLF V+ DA + IG VLSQ P+AFFS+K+ Q S Y E+YA+ K W Y
Sbjct: 851 SKLFVVETDASAVAIGAVLSQEGPPLAFFSKKMCNRMQSSSVYVREMYAITEAIKKWHQY 910
Query: 490 LLGREFIIYTDHQALTHFQTQKKVSKMHAHW 520
L+GR F IYTD ++L + Q + W
Sbjct: 911 LIGRHFHIYTDQKSLKNLLVQTIQTPEQQKW 941
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 8/163 (4%)
Query: 804 EMWDLALAQAEFAYNNAIHSSTKVSPFAIVYRKVLAYTLDLLSFLAGAEMNIAANNLATK 863
+ W L AE YN++ HS+ +++PF +Y + D +++G ++ + + T
Sbjct: 1216 KQWYKYLHLAELWYNSSFHSAIRMTPFEALYGRPPPRMTD---YISGRSSLLSVDQILTH 1272
Query: 864 HVEAFEQVQQFITAANEKYKAVADKHWXYKSFTIGDXVMVYLRKERRGA-----QKKLDW 918
++ + + ++ A+KH +F GD V++ L+ R+ +KL
Sbjct: 1273 RQAIITNLKHNLHISKQRMAFQANKHRIDCAFQEGDLVLLKLQPYRQTTVQHRVSQKLAK 1332
Query: 919 KKIGLFQIHKKINDNAYVLNLPEDMKISRTFNVAGLFPFYSDD 961
+ G F +H++I AY L LP D KI F+V+ L ++ D
Sbjct: 1333 RFFGPFTVHRRIGSMAYELRLPPDSKIHPVFHVSQLRAYHGRD 1375
>IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold AC229695.5 96798-94993 H
EGN_Mt090430 20090702
Length = 555
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 155/254 (61%), Gaps = 3/254 (1%)
Query: 272 MTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVLDALQKNELYINLKKCSFMTERI 331
M +VL P+LRK+ ++ FDDIL++S+ E H +LG VL L++++L N KKC+F ++
Sbjct: 1 MNEVLRPYLRKFALVFFDDILVYSKDVEHHKHHLGAVLALLKEHQLVANYKKCTFGQHQL 60
Query: 332 LFLGYIVSTKGIHVDDRKIEAIRNWPSPKNVTEVCSFHGLATFYMWFIKNFSSIVAPITD 391
+LG+I+S +G+ D +K++ + WP PK++ + F GL +Y F++N+ SI P+T
Sbjct: 61 EYLGHIISAQGVAADQKKVDVMLTWPRPKDLKSLRGFLGLTGYYRRFVRNYGSIAKPLTH 120
Query: 392 CLKKEKVRQFVWIEAANRSFEEIKDKLTSAPILALPDFDKLFEVDCDACRIGIGGVLSQS 451
LKK+ F+W E A SF+ +K + PIL++P+F F ++ DA G+G +L Q
Sbjct: 121 LLKKD---NFLWNEEAQLSFDTLKKAMAELPILSVPNFSIPFVIETDASNTGLGAILMQQ 177
Query: 452 RKPIAFFSEKLNEARQKWSTYGXELYAVFRTFKTWEHYLLGREFIIYTDHQALTHFQTQK 511
+P+AF S+ L+E Q+ S Y EL A+ + W HYL+G FII+TD ++L Q Q+
Sbjct: 178 GRPVAFLSQPLSERAQRKSIYERELMAIVFAVQKWRHYLMGNHFIIHTDQKSLKFLQDQR 237
Query: 512 KVSKMHAHWQRILV 525
+ W L+
Sbjct: 238 VLGADQFKWTSKLM 251
>IMGA|Medtr3g026370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
7081109-7063368 E EGN_Mt090430 20090702
Length = 377
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 147/261 (56%), Gaps = 17/261 (6%)
Query: 250 GRIKWLVMPFGLTNASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVL 309
G + VMPFGL NA STF M + PFLRK+ +HL +L +L
Sbjct: 91 GHYECKVMPFGLCNAPSTFKSTMNNLFQPFLRKFAA--------------DHLTHLQLIL 136
Query: 310 DALQKNELYINLKKCSFMTERILFLGYIVSTKGIHVDDRKIEAIRNWPSPKNVTEVCSFH 369
L + + ++ KC F ++ +LG+I+S KGI D K++A+ WP P + T + F
Sbjct: 137 TKLLEAQFFLKQSKCLFGQRQLEYLGHIISQKGIQADPSKLQAMVEWPQPTSTTLLRRFL 196
Query: 370 GLATFYMWFIKNFSSIVAPITDCLKKEKVRQFVWIEAANRSFEEIKDKLTSAPILALPDF 429
GL FY FIK ++SI AP+T+ LKK+ F+W A SF+ +K +T AP LA+PDF
Sbjct: 197 GLTGFYRKFIKGYASIAAPLTNLLKKDS---FIWSPEAEHSFQTLKKAMTEAPTLAVPDF 253
Query: 430 DKLFEVDCDACRIGIGGVLSQSRKPIAFFSEKLNEARQKWSTYGXELYAVFRTFKTWEHY 489
F+++ DA +G VL Q PIAFFS++L + + STY EL+A+ K W Y
Sbjct: 254 TLPFDLETDASAKAMGAVLMQQNHPIAFFSKQLCQRLLRSSTYVRELHAITTAVKKWRQY 313
Query: 490 LLGREFIIYTDHQALTHFQTQ 510
LLG F I+TDH++L +Q
Sbjct: 314 LLGHPFTIHTDHKSLKELISQ 334
>IMGA|Medtr5g047510.1 Putative gag-pol polyprotein, identical,
chr05_pseudomolecule_IMGAG_V3 20065664-20063904 H
EGN_Mt090430 20090702
Length = 460
Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 94/172 (54%), Gaps = 44/172 (25%)
Query: 344 HVDDRKIEAIRNWPSPKNVTEVCSFHGLATFYMWFIKNFSSIVAPITDCLKKEKVRQFVW 403
VD+ K+ AIR+WP+P +VTE SFHGLATFY FI+ FS I APIT CL+K K++ W
Sbjct: 168 QVDEEKVRAIRDWPAPTSVTEKRSFHGLATFYRRFIRYFSIITAPITKCLEKGKLK---W 224
Query: 404 IEAANRSFEEIKDKLTSAPILALPDFDKLFEVDCDACRIGIGGVLSQSRKPIAFFSEKLN 463
+SF IK KL +AP+L LP+F+K+F+V+CD
Sbjct: 225 GSEQEQSFALIKKKLCAAPVLPLPNFEKVFQVECDDS----------------------- 261
Query: 464 EARQKWSTYGXELYAVFRTFKTWEHYLLGREFIIYTDHQALTHFQTQKKVSK 515
+ WEHYL+ REFI++TDHQAL +QK ++K
Sbjct: 262 ------------------ALRQWEHYLIHREFILFTDHQALKFLHSQKVINK 295
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 137/282 (48%), Gaps = 10/282 (3%)
Query: 250 GRIKWLVMPFGLTNASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVL 309
G + VMPFGL NA +T+ MT + H + K + ++ DD+++ S EE+H++YL ++
Sbjct: 219 GTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMF 278
Query: 310 DALQKNELYINLKKCSFMTERILFLGYIVSTKGIHVDDRKIEAIRNWPSPKNVTEVCSFH 369
+ L+K +L +N KC+F LG+IVS KGI VD K+ AIR P+P+ +V F
Sbjct: 279 ERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFL 338
Query: 370 GLATFYMWFIKNFSSIVAPITDCLKKEKVRQFVWIEAANRSFEEIKDKLTSAPILALPDF 429
G + FI + ++ PI L+K + VW + +F+ IK+ L PIL P
Sbjct: 339 GRLNYISRFISHMTATCGPIFKLLRKNQ--PVVWNDECQEAFDSIKNYLLEPPILVPPVE 396
Query: 430 DK-------LFEVDCDACRIGIGGVLSQSRKPIAFFSEKLNEARQKWSTYGXELYAVFRT 482
+ +F+ + C +G + I + S+K + +++ A+
Sbjct: 397 GRPLIMYLAVFD-ESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWA 455
Query: 483 FKTWEHYLLGREFIIYTDHQALTHFQTQKKVSKMHAHWQRIL 524
K HYL+ + + + + + V+ A WQ +L
Sbjct: 456 AKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLL 497
>IMGA|AC233082_2.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233082.3 16661-16311 H EGN_Mt090430
20090702
Length = 116
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 74/115 (64%)
Query: 257 MPFGLTNASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVLDALQKNE 316
MPFGL+NA S+F M +L P+LR+++++ FDDILI+S +HL +L +LD L N+
Sbjct: 1 MPFGLSNAPSSFQSAMNDMLRPYLRRFVLVFFDDILIYSTNMADHLIHLRLILDLLVTNQ 60
Query: 317 LYINLKKCSFMTERILFLGYIVSTKGIHVDDRKIEAIRNWPSPKNVTEVCSFHGL 371
L KC F E + +LG+++S +G+ D K+ AI +WP P ++T + F GL
Sbjct: 61 FVAKLSKCVFAVETVHYLGHVISAQGVKADPEKVTAITDWPKPHSLTALRGFLGL 115
>IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
5672480-5674573 E EGN_Mt090430 20090702
Length = 253
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 79/134 (58%)
Query: 250 GRIKWLVMPFGLTNASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVL 309
G + VMPFGL NA +T+ MT + H + K + ++ DD+++ S EE+H++YL ++
Sbjct: 87 GTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMF 146
Query: 310 DALQKNELYINLKKCSFMTERILFLGYIVSTKGIHVDDRKIEAIRNWPSPKNVTEVCSFH 369
+ L+K +L +N KC+F LG++VS KGI VD K+ AIR P+P+ +V F
Sbjct: 147 ERLRKYKLRLNPNKCTFGVRSGKLLGFVVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFL 206
Query: 370 GLATFYMWFIKNFS 383
G + FI + +
Sbjct: 207 GRLNYISRFISHMT 220
>IMGA|Medtr5g047500.1 Ty3-gypsy-like retroelement pol polyprotein,
putative chr05_pseudomolecule_IMGAG_V3 20052037-20051443
H EGN_Mt090430 20090702
Length = 181
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/136 (38%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 802 EEEMWDLALAQAEFAYNNAIHSSTKVSPFAIVYRKVLAYTLDLLSFLAGAEMNIAANNLA 861
+ + W LAL Q EFAY + +HS+T+ +PFA+VY V Y +DL+ ++++A +A
Sbjct: 14 KSKQWYLALTQVEFAYKSIVHSATEKTPFALVYTPVPRYVIDLIQLHKALKVSVAPEKMA 73
Query: 862 TKHVEAFEQVQQFITAANEKYKAVADKHWXYKSFTIGDXVMVYLRKER--RGAQKKLDWK 919
+ + + V+ + K K VADK K +GD VMV+L KER G KL
Sbjct: 74 EEIMTVKDSVKAKLEDTGLKNKVVADKRRRVKVLNVGDDVMVFLCKERFLVGTYNKLHPC 133
Query: 920 KIGLFQIHKKINDNAY 935
K F++ +KINDNAY
Sbjct: 134 KYSPFKVTRKINDNAY 149
>IMGA|Medtr4g073740.1 polyprotein, putative
chr04_pseudomolecule_IMGAG_V3 14702170-14702511 H
EGN_Mt090430 20090702
Length = 113
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%)
Query: 418 LTSAPILALPDFDKLFEVDCDACRIGIGGVLSQSRKPIAFFSEKLNEARQKWSTYGXELY 477
+ PIL +PDF K+F ++ DA G+G VL Q +P+AF S+ L++ Q Y EL
Sbjct: 1 MAELPILTVPDFSKVFTIETDASNKGLGAVLLQEGRPVAFHSQNLSDRAQSKLVYERELM 60
Query: 478 AVFRTFKTWEHYLLGREFIIYTDHQALTHFQTQKKVSKMHAHWQRILV 525
A+ + W HYLLGR FII TD ++L Q+ +++ W L+
Sbjct: 61 AIVTAVQKWRHYLLGRHFIILTDQKSLKLLVDQRLLNEEQFKWTSKLI 108
>IMGA|AC233082_1.1 Polynucleotidyl transferase, Ribonuclease H fold
AC233082.3 16225-8671 H EGN_Mt090430 20090702
Length = 695
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 407 ANRSFEEIKDKLTSAPILALPDFDKLFEVDCDACRIGIGGVLSQSRKPIAFFSEKLNEAR 466
A+++F +K +T+ P+L LPDF K F V+ DA + IG VLSQ P+AFFS+K+
Sbjct: 3 ADKAFTTLKIHMTTMPVLHLPDFSKTFVVETDASAVAIGAVLSQEGHPLAFFSKKMTPKM 62
Query: 467 QKWSTYGXELYAVFRTFKTWEHYLLGREFIIYTDHQALTHFQTQKKVSKMHAHW 520
Q S Y E++AV + IYTD ++L + QK + W
Sbjct: 63 QAASVYVREMFAVTES--------------IYTDQKSLRNLLLQKIQTPEQQKW 102
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 817 YNNAIHSSTKVSPFAIVYRKVLAYTLDLLSFLAGAEMNIAANNLATKHVEAFEQVQQFIT 876
+N+ +HS+T+++PF +Y + D ++ + + +L +H+ +Q+++ +T
Sbjct: 367 HNSTVHSATQLTPFQALYGRPPPKIPDYVT--GSSSITSLEESLQARHL-VLQQLKKNLT 423
Query: 877 AANEKYKAVADKHWXYKSFTIGDXVMVYLRKER-----RGAQKKLDWKKIGLFQIHKKIN 931
+ ++ + A+K +F +GD V++ L+ R R + +KL + G F + ++I
Sbjct: 424 KSRKQMEVQANKKRRDHTFNVGDLVLLRLQPYRQSTVQRRSSQKLAKRFFGPFHVLERIG 483
Query: 932 DNAYVLNLPEDMKISRTFNVAGLFPFY 958
AY L+LP D KI +++ L P+Y
Sbjct: 484 SVAYKLDLPPDSKIHPVVHISLLRPYY 510
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 108/253 (42%), Gaps = 8/253 (3%)
Query: 254 WLVMPFGLTNASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVLDALQ 313
+ VM FGL NA +TF M + + ++ DD++ ++ H L +L ++
Sbjct: 113 YEVMYFGLKNAGATFQRSMDTAFSQQIGRNREVYIDDLVAKTKEGLSHTDDLEEILGQVR 172
Query: 314 KNELYINLKKCSFMTERILFLGYIVSTKGIHVDDRKIEAIRNWPSPKNVTEVCSFHG-LA 372
K + +N KCSF + FLG++++ GI + K +AI N SP NV EV G LA
Sbjct: 173 KYRIRLNPTKCSFGVQVGKFLGFLLTRWGIEANTDKCQAIINMRSPSNVKEVQQLTGRLA 232
Query: 373 TFYMWFIKNFSSIVAPITDCLKKEKVRQFVWIEAANRSFEEIKDKLTSAPILALPDFDKL 432
+ KKEK F W +F++IK L+S P+L P+ + +
Sbjct: 233 ALSRCLSCAGDKAFSFFASIKKKEK---FEWTAECEDAFQQIKMFLSSLPLLQRPNKNAI 289
Query: 433 FEVDCDACRIGIGGVLSQ----SRKPIAFFSEKLNEARQKWSTYGXELYAVFRTFKTWEH 488
+ + VL + KPI + S A+ + AV T +
Sbjct: 290 IFLYLVISENAMSTVLVEESEVGEKPIYYVSRVFKGAKLPYQKIECLALAVVTTARKLRP 349
Query: 489 YLLGREFIIYTDH 501
Y + ++ +++
Sbjct: 350 YFQSHKIVVKSNY 362
>IMGA|Medtr5g062290.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
21895306-21893422 E EGN_Mt090430 20090702
Length = 306
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 121/260 (46%), Gaps = 15/260 (5%)
Query: 261 LTNASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRME-EEHLQYLGRVLDALQKNELYI 319
+ + F M +L F + + +++ DDIL+FS + ++H + + VL+ ++ + +
Sbjct: 1 MKQSPGIFQRRMDTILKEF-KDFCLIYIDDILVFSNKDLDDHFKKVELVLNKCFEHGVVL 59
Query: 320 NLKKCSFMTERILFLGYIVSTKGIHVDDRKIEAIRNWPSP-KNVTEVCSFHGLATF--YM 376
+ KK +I +LG + + +E ++ +P+ K+ E+ F GL T+ Y
Sbjct: 60 SKKKAVVAQNKINYLGLEIEKGKFLMQKHVLEKLQKFPTKLKDKKELQRFLGLLTYISYE 119
Query: 377 WFIKNFSSIVAPITDCLKKEKVRQFVWIEAANRSFEEIKDKLTSAPILALPDFDKLFEVD 436
FIKN ++ + LKK+ + + W E ++K+ P L P D L ++
Sbjct: 120 GFIKNLAAESKLLQQKLKKDSI--WSWTEDDEVLITKLKNLCQDLPELYHPSDDDLIIIE 177
Query: 437 CDACRIGIGGVLSQSRKP-------IAFFSEKLNEARQKWSTYGXELYAVFRTFKTWEHY 489
DA GGV+ +++ P + S +++ + T+ E AV R + Y
Sbjct: 178 TDASNKYWGGVM-KAKPPGQKKELLCRYMSGTFSDSEINYPTHEKETLAVIRMLEKHRIY 236
Query: 490 LLGREFIIYTDHQALTHFQT 509
+L +EFI+ TD + F+
Sbjct: 237 VLDKEFIVRTDSTYVAGFKN 256
>IMGA|Medtr3g026360.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 7063133-7061964 H
EGN_Mt090430 20090702
Length = 356
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 802 EEEMWDLALAQAEFAYNNAIHSSTKVSPFAIVYRKVLAYTLDLLSFLAGAEMNIAANNLA 861
+ W L AE++YN +IHS+T SPF + Y K + ++L G+ A + L
Sbjct: 143 KPNQWYSFLPLAEWSYNTSIHSATGFSPFYVTYDKEPP---SIPNYLIGSSRIEAVDTLL 199
Query: 862 TKHVEAFEQVQQFITAANEKYKAVADKHWXYKSFTIGDXVMVYLRKERRGA-----QKKL 916
+ + + + + A E+ K ADK +F IGD V V LR R+ + KL
Sbjct: 200 SSRQDILTILTKKLLKAQERMKHYADKKRRDITFNIGDFVYVKLRPYRQQSITGTTYSKL 259
Query: 917 DWKKIGLFQIHKKINDNAYVLNLPEDMKISRTFNVAGLFP 956
+ G +QI K+ A+ L LP + K F+ + L P
Sbjct: 260 SKRYYGPYQIIDKMGPVAFKLQLPPNTKTHLVFHCSLLKP 299
>IMGA|AC229695_24.1 Chromo AC229695.5 111963-111064 H EGN_Mt090430
20090702
Length = 299
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 806 WDLALAQAEFAYNNAIHSSTKVSPFAIVYRKVLAYTLDLLSFLAGAEMNIAANNLATKHV 865
W L AEF YN++ S ++PF +VY + L+ + A++ + +L +
Sbjct: 14 WSKLLDWAEFWYNSSYQCSIGMTPFKVVYGRDPPI---LIKYDTAADVTPSLQSLLVERD 70
Query: 866 EAFEQVQQFITAANEKYKAVADKHWXYKSFTIGDXVMVYLRKERRGA-----QKKLDWKK 920
E + ++ + A + K AD + F +GD V+V L+ R+ + +KL +
Sbjct: 71 ETLQLLKVNLHRAQQIMKKYADSKRRFAEFQVGDMVLVKLQPYRQHSLALHQNQKLGLRY 130
Query: 921 IGLFQIHKKINDNAYVLNLPEDMKISRTFNVAGLFPFYSD 960
G F + ++I AY L LP KI F++ L P D
Sbjct: 131 FGPFPVIQRIGLVAYKLLLPPSAKIHLVFHIVNLKPCKGD 170
>IMGA|Medtr7g022550.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
5661429-5660887 H EGN_Mt090430 20090702
Length = 180
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 254 WLVMPFGLTNASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVLDALQ 313
++VM F L N T+ +M +V +R + + DD+++ R E +H+ +L V ++
Sbjct: 68 YVVMSFKLKNVGVTYQRMMNEVFKDEIRDMLKVCMDDMIVKYREELDHMSHLNVVFIKVR 127
Query: 314 KNELYINLKKCSFMTERILFLGYIVSTKGIHV--DDRKIEAIRNWPSPK 360
K ++ NL+ C+F + F+G ++ KGI V D+ K E P K
Sbjct: 128 KYNMHSNLENCTFGVKAAKFMGLYLTEKGIKVNPDNFKAEVDMELPMKK 176
>IMGA|Medtr3g169290.1 Putative retroelement pol polyprotein,
chr03_pseudomolecule_IMGAG_V3 44105220-44104602 H
EGN_Mt090430 20090702
Length = 181
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 317 LYINLKKCSFMTERILFLGYIVSTKGIHVDDRKIEAIRNWPSPKNVTEVCSFHGLATFYM 376
+ +NL+KC+F + FLG+ ++ +GI + K AI P+P + + +G+
Sbjct: 1 MRLNLEKCTFGVQAGKFLGFYLTERGIEANRDKCHAITELPTPHSKKCIQILNGMLIALS 60
Query: 377 WFIKNFSSIVAPITDCLKKEKVRQFVWIEAANRSFEEIKDKLTSAPILALP 427
F+ + P L+KE +F W + + +K+ L++ P+L+ P
Sbjct: 61 RFVAKSAEHALPFFKLLRKET--KFGWTDECENALNHLKETLSAPPVLSRP 109
>IMGA|Medtr6g065010.1 reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12073349-12073158 H
EGN_Mt090430 20090702
Length = 63
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 257 MPFGLTNASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVLDALQKNE 316
MPFGL NA S F +M Q+ P LR ++++ FD ILI+ +HL +L V L N+
Sbjct: 1 MPFGLCNAPSIFQAIMNQIFSPHLRCFVIVFFDAILIYIHTFHDHLIHLDIVFRYLMDNQ 60
Query: 317 LY 318
+
Sbjct: 61 FF 62
>IMGA|Medtr4g062370.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
12064249-12070465 E EGN_Mt090430 20090702
Length = 152
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 250 GRIKWLVMPFGLTNASSTFMXLMTQVLHPFLRKYIVLHFDDILIFSRMEEEHLQYLGRVL 309
G + VM FGL NA +T+ MT + H + K + ++ DD+++ S EE+H++YL ++
Sbjct: 87 GTFCYKVMSFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMF 146
Query: 310 DALQK 314
+ L+K
Sbjct: 147 ERLRK 151