Jatropha Genome Database

JcCA0262351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0262351.10 - phase: 0 
         (165 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g020310.1 nucleic acid binding, OB-fold, tRNA/helicas...   182   7e-47
IMGA|Medtr5g020270.1 hypothetical protein chr05_pseudomolecule_I...    62   2e-10

>IMGA|Medtr5g020310.1 nucleic acid binding, OB-fold,
           tRNA/helicase-type chr05_pseudomolecule_IMGAG_V3
           7648206-7663816 E EGN_Mt090430 20090702
          Length = 185

 Score =  182 bits (462), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 112/156 (71%), Gaps = 5/156 (3%)

Query: 6   QNTHVKLLAFDLLSLTQLPXXXXXXXXXXXRLGKSFSRAEILGIVTSREHKPNKFLKFTI 65
            NTHVKLLAFDLL+LT              R     +RAE +G +T R+HKP KFL+F I
Sbjct: 13  HNTHVKLLAFDLLTLTP----PISPNHSFTRNSIPITRAETVGTITLRDHKPFKFLRFAI 68

Query: 66  DDGTGCVSCVLWLNQLTSPYFSRR-SPPDVRLIADMASHFASEIKIGVVACVRGRITSYR 124
           DDGTGC+ C+LWLN +TSP+ +RR SP D+ L+AD A+  A  +K+G VA VRGR+T Y+
Sbjct: 69  DDGTGCIPCILWLNHMTSPHLARRRSPQDLCLLADAAARSAEVVKVGNVARVRGRVTEYK 128

Query: 125 GAVQITVSDVVIERDPNAEILHWLNCIRLARNCYDV 160
           G VQITV+DV+ ERDPN E+LHW+ C+ LARNCY++
Sbjct: 129 GGVQITVTDVISERDPNVEVLHWVECVNLARNCYNL 164


>IMGA|Medtr5g020270.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 7636056-7636883 E
           EGN_Mt090430 20090702
          Length = 79

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 17/81 (20%)

Query: 81  LTSPYFSR-RSPPDVRLIADMASHFASEIKIGVVACVRGRITSYRGAVQITVSDVVIERD 139
           +TSP  +R RSP D+ L+ D A+  A  +K                 VQIT+++VV ERD
Sbjct: 1   MTSPQLARWRSPQDLCLLVDAAARLAEVVK----------------GVQITITNVVGERD 44

Query: 140 PNAEILHWLNCIRLARNCYDV 160
            N E+LH + C+ LARNCY++
Sbjct: 45  LNVEVLHLVECVNLARNCYNL 65