Jatropha Genome Database

JcCA0261291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261291.10 - phase: 1 /pseudo/partial
         (68 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g074720.1 Polynucleotidyl transferase, Ribonuclease H...    54   2e-08
IMGA|Medtr8g079170.1 Polynucleotidyl transferase, Ribonuclease H...    53   3e-08
IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse transc...    49   6e-07
IMGA|Medtr8g037150.1 Polynucleotidyl transferase, Ribonuclease H...    48   1e-06
IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H...    47   2e-06
IMGA|Medtr4g154770.1 Polynucleotidyl transferase, Ribonuclease H...    46   4e-06
IMGA|Medtr3g124260.1 Polynucleotidyl transferase, Ribonuclease H...    46   5e-06
IMGA|Medtr8g093640.1 Polynucleotidyl transferase, Ribonuclease H...    46   5e-06
IMGA|Medtr3g030670.1 Polynucleotidyl transferase, Ribonuclease H...    45   8e-06
IMGA|Medtr8g070830.1 hypothetical protein chr08_pseudomolecule_I...    45   8e-06
IMGA|Medtr5g037350.1 Polynucleotidyl transferase, Ribonuclease H...    45   9e-06

>IMGA|Medtr8g074720.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr08_pseudomolecule_IMGAG_V3 14929440-14928565 H
           EGN_Mt090430 20090702
          Length = 241

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSFR 61
           W KP +GR KCN DA+   + +RVG G+ +RDE G+ I A    S  V  + + EA+   
Sbjct: 82  WQKPAHGRLKCNVDASFSDDLNRVGFGFCIRDEGGNFIRAKTMWSNPVCSIDVGEAMGLS 141

Query: 62  QAL 64
            A+
Sbjct: 142 HAI 144


>IMGA|Medtr8g079170.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr08_pseudomolecule_IMGAG_V3 16416556-16417454 E
           EGN_Mt090430 20090702
          Length = 288

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 37/64 (57%)

Query: 1   LWSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSF 60
           LW KP  GR KCN DAA  SN +R G+G  +RDE G+ + A  +    +  V + EA+  
Sbjct: 128 LWQKPTSGRYKCNVDAAFSSNFNRTGIGICIRDEEGAFVLAKMTSFPCLDQVTVGEAMGL 187

Query: 61  RQAL 64
            +AL
Sbjct: 188 FEAL 191


>IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse
           transcriptase); Polynucleotidyl transferase,
           Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
           15868030-15871357 E EGN_Mt090430 20090702
          Length = 845

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 1   LWSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSF 60
           +W KP  GR KCN DA+  ++ ++VG+G  LRD+ G+ + A       + D+ + EA+  
Sbjct: 677 VWKKPAPGRYKCNIDASFSTSLNKVGLGMCLRDDDGAFVLARTEWFAPICDIDVGEAVGL 736

Query: 61  RQAL 64
             AL
Sbjct: 737 HTAL 740


>IMGA|Medtr8g037150.1 Polynucleotidyl transferase, Ribonuclease H
          fold, putative chr08_pseudomolecule_IMGAG_V3
          7978617-7978897 H EGN_Mt090430 20090702
          Length = 79

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query: 2  WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSFR 61
          W+KP  GR K N DA+      RVG+G  ++DE G  + A       +TDV   EAL+  
Sbjct: 13 WTKPSPGRYKSNVDASFSEPLDRVGIGICIKDEEGGFVLARTEWFSPITDVDRGEALALL 72

Query: 62 QAL 64
          +AL
Sbjct: 73 KAL 75


>IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr02_pseudomolecule_IMGAG_V3 19822787-19820648 H
           EGN_Mt090430 20090702
          Length = 612

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%)

Query: 1   LWSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSF 60
           +W KP  GR KCN DA+  ++ +RVG+G  LRD+ G+ + A       + D+   EA+  
Sbjct: 448 VWKKPAPGRYKCNIDASFSTSLNRVGLGMCLRDDDGAFVLARTKWFAHICDIDAGEAVGL 507

Query: 61  RQAL 64
              L
Sbjct: 508 HTTL 511


>IMGA|Medtr4g154770.1 Polynucleotidyl transferase, Ribonuclease H
           fold, related chr04_pseudomolecule_IMGAG_V3
           38076482-38077742 E EGN_Mt090430 20090702
          Length = 140

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 33/63 (52%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSFR 61
           W KP  GR KCN DA+     + VG G  +RDE+G++I A    S  V    + EAL   
Sbjct: 65  WQKPASGRLKCNVDASFSEALNCVGFGLCIRDENGNLIKARTLWSNPVCATNIGEALGLS 124

Query: 62  QAL 64
            A+
Sbjct: 125 HAI 127


>IMGA|Medtr3g124260.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr03_pseudomolecule_IMGAG_V3 31444078-31442691 H
           EGN_Mt090430 20090702
          Length = 404

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 32/63 (50%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSFR 61
           W KP  GR KCN  A+  S+ ++VGVG  +RDE G  + A       +  V + EAL   
Sbjct: 245 WKKPMRGRLKCNVVASFSSSTNKVGVGMCIRDEDGCFVRAKTMWHTPLCSVDIGEALGLH 304

Query: 62  QAL 64
             +
Sbjct: 305 HTI 307


>IMGA|Medtr8g093640.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr08_pseudomolecule_IMGAG_V3 20655028-20657384 H
           EGN_Mt090430 20090702
          Length = 376

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 25/41 (60%)

Query: 1   LWSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINA 41
           LW KP  GR KCN DA   SN +R G+G  + DE G+ + A
Sbjct: 231 LWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLA 271


>IMGA|Medtr3g030670.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr03_pseudomolecule_IMGAG_V3 8366792-8365192 H
           EGN_Mt090430 20090702
          Length = 216

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSFR 61
           W+KP YGR KCN DA+   + + VG+G  + D+ G    A       + DV + EA+   
Sbjct: 57  WTKPVYGRYKCNIDASFSDSLNMVGIGICICDDQGKFDMAKTDCFSPLCDVDVGEAVGLH 116

Query: 62  QAL 64
            AL
Sbjct: 117 TAL 119


>IMGA|Medtr8g070830.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 13835428-13833781 E
           EGN_Mt090430 20090702
          Length = 214

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 1   LWSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSF 60
           +W KP  GR KCN DA+  ++ + VG+G  LRDE G  + A       + D+ + E + F
Sbjct: 43  VWKKPAPGRYKCNIDASFSTSLNWVGLGMYLRDEDGGFVLARTEWFDPLCDIDVGEVVDF 102


>IMGA|Medtr5g037350.1 Polynucleotidyl transferase, Ribonuclease H
           fold, related chr05_pseudomolecule_IMGAG_V3
           15706513-15705903 H EGN_Mt090430 20090702
          Length = 145

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSFR 61
           W KP  GR KCN  AA  +  +RVG+G  +RD+ GS + A       +  V   EAL   
Sbjct: 58  WKKPDRGRYKCNVGAAFSTATNRVGIGICIRDDQGSFVLAKTKWISPILKVDEGEALGVS 117

Query: 62  QAL 64
            A+
Sbjct: 118 YAI 120