Jatropha Genome Database

JcCA0261271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261271.10 + phase: 0 
         (134 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g109230.1 AAA ATPase chr03_pseudomolecule_IMGAG_V3 27...    77   4e-15

>IMGA|Medtr3g109230.1 AAA ATPase chr03_pseudomolecule_IMGAG_V3
           27341463-27331823 E EGN_Mt090430 20090702
          Length = 713

 Score = 76.6 bits (187), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 50/103 (48%), Gaps = 16/103 (15%)

Query: 1   MTEVASSVVHEVLGPRVQDVDQPIVDYIINVXXXXXXXXXXXXXXXXXXXXXXXXXXXCV 60
           MTEVA SVVHEV+G ++ DVD+PIV YI+NV                           CV
Sbjct: 1   MTEVARSVVHEVIGDKITDVDEPIVSYIVNVLADEDFDFGLDGEGAFDALGDLLVAAGCV 60

Query: 61  SDFEECR----------------LQKPTVRSLTAPIRMNDGMD 87
            DF ECR                  KPTVRSL AP RMN+G+D
Sbjct: 61  PDFPECRSVCSKLSDKFGKHGLVKAKPTVRSLAAPFRMNEGLD 103